PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002364-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 315aa    MW: 34790.1 Da    PI: 4.7084
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002364-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036290312223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +C+ C+++F + + Lk H +  H
  NNU_002364-RA 290 SCQSCNRTFYTEEGLKAHKMAkH 312
                    6*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.055289315IPR007087Zinc finger, C2H2
PROSITE patternPS000280291312IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEFWGVEVKA GEPLKVQLDE KLLHLSQASL GEVKNKGNDX VPLFVKIGGQ KLVIGTLSPD  60
KCMQLSFDLV FDKEFELSHN WKNGSVYFCG YKSVIPDEYP KYNFLIMLNY TDDSDFEDLP  120
LSATENGKPE QKDGQPKASA DKSKASKPDV SAVKQKVKIV EPKKGEKSKL DESDDSDESD  180
DSEEDESDDE DMLGAGDESD EDDEDEESSE GEDEETPKKK TEQGKKRAAE SATKTPVPEK  240
KAKLGTPQKT DGKKGGGHTA TPHPNKQSSK TPANSEKKQK QTPKSADKVS CQSCNRTFYT  300
EEGLKAHKMA KHSDN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243597.11e-175PREDICTED: histone deacetylase HDT1-like isoform X1
TrEMBLA0A1U7YW341e-174A0A1U7YW34_NELNU; histone deacetylase HDT1-like isoform X1
STRINGXP_010243597.11e-175(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-35histone deacetylase 3