PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002395-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRF

Protein Properties

Length: 380aa MW: 41386 Da PI: 9.1059

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002395-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.2	1.9e-25	137	180	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e NNU_002395-RA 137 DSEPGRCRRTDGKKWRCSRDVVAGHKYCERHMHRGRNRSRKPVE 180 689**************************************987 PP
2	QLQ	53.5	7.4e-19	70	105	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +F+ aQ+q+L+ Q+l++Ky++a++ vPpeLlq+i+k NNU_002395-RA 70 YFSLAQWQELELQALIFKYMLAGAAVPPELLQPIKK 105 7*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.8E-11	69	105	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21	70	105	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.6E-14	70	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.026	137	181	IPR014977	WRC domain
Pfam	PF08879	1.7E-21	139	180	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MDYNLKQWRN QYESEQPPSA KIPRLLLESH QQPSGSALPL FVPEPNSRIS NLSAFPDSTT 60 TTRFPRMGGY FSLAQWQELE LQALIFKYML AGAAVPPELL QPIKKSLLSS SACYLQYPYQ 120 QYQHYQPSRY WGRSVVDSEP GRCRRTDGKK WRCSRDVVAG HKYCERHMHR GRNRSRKPVE 180 IPTPATATGG GLKNTIPVAA SPLTAVASGS HFALSGSSPS IDLFQLNQRS SEGTGGSGVL 240 VETHQDKVSA DGRTDGRILR HFFDDWPRSH QEPNSVGSNA SPTTSTTCLS ISTPGNATSD 300 FSLKLSTGNG DESGGSRDVN VGGERHQLNW ASGWGTHPVP SMGGPLAEAL RSSTSNSSPT 360 SVLHELPRAT TISETSSVST

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MDYNLKQWRN QYESEQPPSA KIPRLLLESH QQPSGSALPL FVPEPNSRIS NLSAFPDSTT  60
TTRFPRMGGY FSLAQWQELE LQALIFKYML AGAAVPPELL QPIKKSLLSS SACYLQYPYQ  120
QYQHYQPSRY WGRSVVDSEP GRCRRTDGKK WRCSRDVVAG HKYCERHMHR GRNRSRKPVE  180
IPTPATATGG GLKNTIPVAA SPLTAVASGS HFALSGSSPS IDLFQLNQRS SEGTGGSGVL  240
VETHQDKVSA DGRTDGRILR HFFDDWPRSH QEPNSVGSNA SPTTSTTCLS ISTPGNATSD  300
FSLKLSTGNG DESGGSRDVN VGGERHQLNW ASGWGTHPVP SMGGPLAEAL RSSTSNSSPT  360
SVLHELPRAT TISETSSVST

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM477984	1e-48	AM477984.2 Vitis vinifera contig VV78X100436.13, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010243928.1	0.0	PREDICTED: growth-regulating factor 3
Swissprot	Q8L8A7	4e-90	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	A0A1U7Z9W6	0.0	A0A1U7Z9W6_NELNU; growth-regulating factor 3
STRING	XP_010243928.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-73	growth-regulating factor 4

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]