PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002451-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 335aa    MW: 38452.5 Da    PI: 8.9417
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002451-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05170189120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    + C++C+k+F+r  n++ H+
  NNU_002451-RA 170 FACSICNKTFNRYNNMQMHM 189
                    78*****************9 PP
2zf-C2H213.80.00017254276123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +C+k+F  k + ++H +++
  NNU_002451-RA 254 FMCRKCSKTFAVKGDWRTHEKNC 276
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.74E-5162192No hitNo description
Gene3DG3DSA:3.30.160.603.8E-6170189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.081170192IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367170197IPR007087Zinc finger, C2H2
PfamPF139121.7E-4170189IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SuperFamilySSF576678.03E-6240274No hitNo description
Gene3DG3DSA:3.30.160.609.2E-5250274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035553254274IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGGRNYHADS RGFCFQAPPT FIEWLKPSAP PSSSSSSSIT QQAQPQYTNL MSRLQLPVFY  60
HQQQQQLLPQ NTQCLPLLSR FSESKSLKEE ENELKRESLD IKDEKLEKVT VALHIGLPNT  120
RDSDDEIKPL DYMKEDNSMK KNIEDSSASS TETRFWIPTP TQILIGPTQF ACSICNKTFN  180
RYNNMQMHMW GHGSQYRKGP ESLKGIQPTA MLRLPCYCCV HGCKNNINHP RAKPLKDFRT  240
LQTHYKRKHG VKPFMCRKCS KTFAVKGDWR THEKNCGKRW YCSCGSDFKH KRSLKDHIKS  300
FGKGHSPYPS EENFEDEKEC ITGSEDEAGS SGRNL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244598.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-118ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A1U7ZA450.0A0A1U7ZA45_NELNU; zinc finger protein WIP3-like
STRINGXP_010244598.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-106WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]