PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002489-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-YB
Protein Properties Length: 153aa    MW: 17096.1 Da    PI: 4.8953
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002489-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB44.63.5e-149102694
          NF-YB   6 rflPianvsrimkkvlPana.....kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                    ++lP a v r++k  l   +      + kda     e +  fi ++++ a+d c++ kr+tin+dd++ al ++ f +++ pl++ l  +r  +
  NNU_002489-RA   9 EELPKAIVRRVVKDKLSRSSdqdeiNVHKDALLAFSESARIFIHYLSATANDICRESKRQTINADDVFKALEEIEFPEFIGPLQASLDVFRRKN 102
                    57999********9998654222226899***********************************************************999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-329146IPR009072Histone-fold
PfamPF008088.5E-111079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471138.95E-2511130IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MAKAASEVEE LPKAIVRRVV KDKLSRSSDQ DEINVHKDAL LAFSESARIF IHYLSATAND  60
ICRESKRQTI NADDVFKALE EIEFPEFIGP LQASLDVFRR KNAGKKAVTA KAKEANKKRK  120
MEEAAAAQNG NEECKENGKE EDNEDEDGSP DKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198119RRKNAGKKAVTAKAKEANKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245113.11e-106PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A1U7YZN11e-105A0A1U7YZN1_NELNU; DNA polymerase epsilon subunit 3
STRINGXP_010245113.11e-106(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-40nuclear factor Y, subunit B11