PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002618-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

TALE

Protein Properties

Length: 729aa MW: 78951.9 Da PI: 7.7722

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002618-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.6e-09	423	460	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + NNU_002618-RA 423 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 460 554459******************************88 PP
2	BELL	123.2	1.1e-39	287	358	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kkakL+++l+eV++rY+qy++q+q+v+s+Fe++ag gsak Yt+lAl++iS++FrcLkdai++qi NNU_002618-RA 287 ERQELQMKKAKLINMLDEVEQRYRQYHHQMQIVVSAFEQAAGFGSAKTYTALALQTISKQFRCLKDAISGQI 358 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.4E-67	215	356	IPR006563	POX domain
Pfam	PF07526	1.5E-50	220	355	IPR006563	POX domain
PROSITE profile	PS50071	12.195	401	464	IPR001356	Homeobox domain
SMART	SM00389	5.3E-9	404	468	IPR001356	Homeobox domain
CDD	cd00086	2.99E-12	404	465	No hit	No description
SuperFamily	SSF46689	9.41E-17	405	470	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-28	407	470	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-18	421	460	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence Send to blast
MATYFHGTSE IQADGLQTLY LMNPGYVGYT DTQPPSNMVF LNSTGNTLNP ASLVNAPQQN 60 QHLVGIPLQA AAVPPGSAAA AAQDPNRPSV HNQQEMSAVH GFVPRVHYNL WTSTQAHHHH 120 HHQISTSAAA AAAVNNSIGV DVSSPLGLRR SVVPLAQQGL SLSLSSQQPT YGSYRQESDL 180 PASAPAPVIS PTSNNEMRIS GGSSSSASAV SSGISGMQSV ILGSKYLKAA QQLLDEVVNV 240 GKGIKAESAK GVKGSSKISR DPNASTGEAS TGGENSTKQA AELTTAERQE LQMKKAKLIN 300 MLDEVEQRYR QYHHQMQIVV SAFEQAAGFG SAKTYTALAL QTISKQFRCL KDAISGQIRA 360 TSKSLGEEDC FGGKTEGSRL RFVDQQLRQQ RALQQLGMIQ HNAWRPQRGL PERSVSVLRA 420 WLFEHFLHPY PKDSDKHMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY LEEIKEQEQN 480 GSEEKTSRSE LNEDSGSKST APHENSPART DQGKNFSSKQ DNSTNPNAVP TAISNSSTTA 540 IMGGIMRSQT GFSLIGSSDM DGLIQGSPKK PCSTEMQNSP SSISVMDMDV KPGDSNRDLF 600 AKFQNGRQSR DGYSLITGTT NNGEAFDTYS IGELGRFDPE QFTPRFSGNG VSLTLGLPHC 660 ENLSLSGTQQ TFLSNQNIQL GRRLEMGGGE PNDFCGLSTP SPHSSAAYEN INIQNRKRFA 720 AQLLPDYVA

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence Send to blast

MATYFHGTSE IQADGLQTLY LMNPGYVGYT DTQPPSNMVF LNSTGNTLNP ASLVNAPQQN  60
QHLVGIPLQA AAVPPGSAAA AAQDPNRPSV HNQQEMSAVH GFVPRVHYNL WTSTQAHHHH  120
HHQISTSAAA AAAVNNSIGV DVSSPLGLRR SVVPLAQQGL SLSLSSQQPT YGSYRQESDL  180
PASAPAPVIS PTSNNEMRIS GGSSSSASAV SSGISGMQSV ILGSKYLKAA QQLLDEVVNV  240
GKGIKAESAK GVKGSSKISR DPNASTGEAS TGGENSTKQA AELTTAERQE LQMKKAKLIN  300
MLDEVEQRYR QYHHQMQIVV SAFEQAAGFG SAKTYTALAL QTISKQFRCL KDAISGQIRA  360
TSKSLGEEDC FGGKTEGSRL RFVDQQLRQQ RALQQLGMIQ HNAWRPQRGL PERSVSVLRA  420
WLFEHFLHPY PKDSDKHMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY LEEIKEQEQN  480
GSEEKTSRSE LNEDSGSKST APHENSPART DQGKNFSSKQ DNSTNPNAVP TAISNSSTTA  540
IMGGIMRSQT GFSLIGSSDM DGLIQGSPKK PCSTEMQNSP SSISVMDMDV KPGDSNRDLF  600
AKFQNGRQSR DGYSLITGTT NNGEAFDTYS IGELGRFDPE QFTPRFSGNG VSLTLGLPHC  660
ENLSLSGTQQ TFLSNQNIQL GRRLEMGGGE PNDFCGLSTP SPHSSAAYEN INIQNRKRFA  720
AQLLPDYVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	410	468	5	63	Homeobox protein Meis2
3k2a_B	4e-16	410	468	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ395607	1e-90	FQ395607.1 Vitis vinifera clone SS0AFA15YB03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010247191.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_010247219.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_010247233.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_019051997.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-157	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1U7Z8A8	0.0	A0A1U7Z8A8_NELNU; BEL1-like homeodomain protein 1
STRING	XP_010247184.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-133	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]