PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002654-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-YA
Protein Properties Length: 326aa    MW: 35454.5 Da    PI: 9.3047
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002654-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32166222158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    d p+YVNaKQy++I++RRq+Rak+e e+kl +k rkpylheSRh hA+rR+Rg+gGrF
  NNU_002654-RA 166 DGPIYVNAKQYHGIIRRRQSRAKAEMENKL-IKVRKPYLHESRHLHAMRRARGCGGRF 222
                    57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.0E-37164225IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.674165225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.8E-24168190IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.9E-28168222IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860170190IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.8E-24199222IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MQTLCFKEHG GIAHNSASQL SPFASVPWWS SLGSQPPYGE SFGQLKSFSL DNPSGGNQLT  60
AAPPQAQLGT DHGQGKDSYS TAHFTIFPGD SRDSGKGSKP QQIPSTIARQ SFPPDYQVRV  120
ELGLGQPMAC ANYPYMDQCY GIFTTYGSQT VMNQGRVMLP LNMTEDGPIY VNAKQYHGII  180
RRRQSRAKAE MENKLIKVRK PYLHESRHLH AMRRARGCGG RFLNTKNTNS QKGTNDTGKA  240
SNVQSSGSPT SEVLQSESAN ANTSREASVG AGLEVTSLYS RGNFDRFHID RLHPSAFHSN  300
IVDSGQGMGI TSKWVAAADG CCDLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-19168230466NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247679.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
RefseqXP_010247690.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X3
TrEMBLA0A1U7ZHJ40.0A0A1U7ZHJ4_NELNU; nuclear transcription factor Y subunit A-10-like isoform X1
TrEMBLA0A1U7ZIX50.0A0A1U7ZIX5_NELNU; nuclear transcription factor Y subunit A-10-like isoform X3
STRINGXP_010247679.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-56nuclear factor Y, subunit A10