PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002667-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

YABBY

Protein Properties

Length: 182aa MW: 20146.8 Da PI: 7.8694

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002667-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	225.3	1.6e-69	2	155	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 +++ +se+vCyv+CnfCntilavsvPstsl+++vtvrCGhC++llsvn+ q l+ ++ +++++++ + + s+s+ ++ NNU_002667-RA 2 SLDVASEHVCYVNCNFCNTILAVSVPSTSLYNIVTVRCGHCANLLSVNMGALIQSLPLQD-------------IQNHNSSTGDLSKDSGSSSKCNK 84 67789********************************************999999877.............46677777888888888888888 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +l++ ++e pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl NNU_002667-RA 85 VPMLDTA-ENEQPRMLP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 155 8776655.567799999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.0E-73	6	155	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-8	99	148	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.5E-5	103	149	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MSLDVASEHV CYVNCNFCNT ILAVSVPSTS LYNIVTVRCG HCANLLSVNM GALIQSLPLQ 60 DIQNHNSSTG DLSKDSGSSS KCNKVPMLDT AENEQPRMLP IRPPEKRQRV PSAYNRFIKE 120 EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLTLDGN KHVQQLDEAI AGEGPKKTQG 180 FY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU227644	2e-40	CU227644.1 Populus EST from severe drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010247861.1	1e-136	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	5e-79	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1U7ZI03	1e-135	A0A1U7ZI03_NELNU; putative axial regulator YABBY 2 isoform X2
STRING	XP_010247851.1	1e-134	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-77	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]