PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002676-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 294aa    MW: 32588.8 Da    PI: 4.9729
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002676-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.23.2e-111057249
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   +ie k + +v fsk r+g++KKA+ L  L + +  +iifs+ gk++++
  NNU_002676-RA 10 KIECKEKLNVCFSKGRTGLFKKAKKLDDLSGSKTVIIIFSPAGKVFTF 57
                   688899999**************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.75E-17176IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.049161IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-131057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRRRIKIEK IECKEKLNVC FSKGRTGLFK KAKKLDDLSG SKTVIIIFSP AGKVFTFGDP  60
VLDSLIDRYL LLHHHQPHRL NQCSVAIEDE YGKVDLNDSE GWMREIESLL MRGKENVMKR  120
VLEQQQKQPA MPSSSCFQSA LLPIESLSGI SFYSSSSSLE TFGVNGFENS VQLEQPESAS  180
AGVSSSSLGG FGAVGCEAKP ERTELEFATG PVLQPDLFFD IDELLKTLSD PLTPEEPTDL  240
NIDHHQQQQL GRGFQNVGIL SESTAENPLE FPSYHRVLTP PLQSWGVNSS QESL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248458.10.0PREDICTED: agamous-like MADS-box protein AGL23
TrEMBLA0A1U7ZJG40.0A0A1U7ZJG4_NELNU; agamous-like MADS-box protein AGL23
STRINGXP_010248458.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-14AGAMOUS-like 62