PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002710-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 371aa    MW: 42617.7 Da    PI: 6.6561
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002710-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-092983332055
                    HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  NNU_002710-RA 298 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 333
                    4679*****************************885 PP
2ELK34.64.3e-12253274122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK +LlrKYsgyL+sL++E+s
  NNU_002710-RA 253 ELKSHLLRKYSGYLSSLRHELS 274
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.9E-21110154IPR005540KNOX1
PfamPF037901.5E-21112151IPR005540KNOX1
SMARTSM012566.5E-27161212IPR005541KNOX2
PfamPF037914.8E-24165210IPR005541KNOX2
SMARTSM011884.2E-7253274IPR005539ELK domain
PROSITE profilePS5121310.947253273IPR005539ELK domain
PfamPF037893.0E-9253274IPR005539ELK domain
PROSITE profilePS5007113.038273336IPR001356Homeobox domain
SuperFamilySSF466891.15E-19274346IPR009057Homeodomain-like
SMARTSM003896.6E-13275340IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-27278338IPR009057Homeodomain-like
CDDcd000861.52E-11285337No hitNo description
PfamPF059201.4E-16293332IPR008422Homeobox KN domain
PROSITE patternPS000270311334IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEGYNQLNHN STRGSFVYTS PVLAPNSSLY GRTSSGSNVN RNQQIQVPVN SFHPESGECY  60
PSEAPPIVKT EASSSQQIQE FRYPLVRGGQ QTVQHHQQEQ RGNGSSSEVD VIKAKIIAHP  120
QYSDLLEAYM ECQKVGAPPE VVARLAAFRR DLETRQRFPI TCRDVSTDPE LDQFMEAYYD  180
ILVKYREELT RPLQEAMEFM RRIEAQLNTL SHGPVRIFSA DKFEEVGSSE EDQGNSGGEM  240
ELPEVDPRAE ERELKSHLLR KYSGYLSSLR HELSKKKKKG KLPKEARQKL LNWWELHYKW  300
PYPSETEKVA LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVLDGLHP QNAALYLEGH  360
FMSDGSYRLG P
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248305.10.0PREDICTED: homeotic protein knotted-1-like
SwissprotO041351e-157KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A1U7ZJ260.0A0A1U7ZJ26_NELNU; homeotic protein knotted-1-like
STRINGXP_010248305.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-129KNOTTED-like from Arabidopsis thaliana