PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002711-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HD-ZIP

Protein Properties

Length: 370aa MW: 41436.6 Da PI: 8.494

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002711-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.5e-19	225	279	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k NNU_002711-RA 225 RKKLRLTKEQSALLEESFKEHHTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 279 788899***********************************************98 PP
2	HD-ZIP_I/II	124.8	3.9e-40	225	314	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l NNU_002711-RA 225 RKKLRLTKEQSALLEESFKEHHTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLTDENRRLKKELQELK-AL 314 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.92E-18	219	282	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.119	221	281	IPR001356	Homeobox domain
SMART	SM00389	4.1E-16	223	285	IPR001356	Homeobox domain
CDD	cd00086	1.35E-17	225	282	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-18	225	279	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-16	225	279	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	256	279	IPR017970	Homeobox, conserved site
SMART	SM00340	2.8E-24	281	324	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	6.8E-10	281	315	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MVNLCREIIE IFVISNVRFV SLVIHCGVRT LINNRCSIAT HPPPTIRPKS LHPFLLLFPS 60 LLHQTFVKAS TGISLHFCRV LMLDSDRLNM GFGDLCNTGL SLGLASQIMP ETRPKSDHPR 120 TKSCLNFDKL FLYSSSTSAV IIKSEEPLLT LSLSDDKYQP AAENMDVDKA GDDSSAVRQA 180 SPHSGISSFS NASVKRERDH GAEEVEVERV SSRVNEEDDQ EGCARKKLRL TKEQSALLEE 240 SFKEHHTLNP KQKQALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCESLTDE 300 NRRLKKELQE LKALKLAQPL YMQLPAATLT MCPSCERIGG IASDGSSKAP IAMASKPHFY 360 NSFTHPSAAC

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MVNLCREIIE IFVISNVRFV SLVIHCGVRT LINNRCSIAT HPPPTIRPKS LHPFLLLFPS  60
LLHQTFVKAS TGISLHFCRV LMLDSDRLNM GFGDLCNTGL SLGLASQIMP ETRPKSDHPR  120
TKSCLNFDKL FLYSSSTSAV IIKSEEPLLT LSLSDDKYQP AAENMDVDKA GDDSSAVRQA  180
SPHSGISSFS NASVKRERDH GAEEVEVERV SSRVNEEDDQ EGCARKKLRL TKEQSALLEE  240
SFKEHHTLNP KQKQALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCESLTDE  300
NRRLKKELQE LKALKLAQPL YMQLPAATLT MCPSCERIGG IASDGSSKAP IAMASKPHFY  360
NSFTHPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	281	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248307.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	6e-88	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A1U7ZKC4	0.0	A0A1U7ZKC4_NELNU; homeobox-leucine zipper protein HAT22-like
STRING	XP_010248307.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-76	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]