PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002719-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

TCP

Protein Properties

Length: 146aa MW: 16075.3 Da PI: 10.3978

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002719-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	89.6	6.7e-28	4	74	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++ ++++ hTkv+gR+ R+ +sa+ ar+F+L++eLG+++d++ti WLl+ +p i+ +tgts+ + ++ NNU_002719-RA 4 RRRASTKDWHTKVEGRGHRIWMSATYTARIFQLTRELGHKSDGETIRWLLKHTEPTIIPATGTSTVPTIAM 74 58999**********************************************************77666333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-21	8	92	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	18.91	9	63	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MVTRRRASTK DWHTKVEGRG HRIWMSATYT ARIFQLTREL GHKSDGETIR WLLKHTEPTI 60 IPATGTSTVP TIAMSVGGIL KSPTTSLASD GDMTKKNRKR SVSSEYYDIS DGVSISSGLA 120 PIGAIAVPQQ LLRHYPITPP SDGWVE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255575.1	9e-62	PREDICTED: transcription factor TCP9
Swissprot	O64647	5e-51	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A1U7ZTX9	2e-60	A0A1U7ZTX9_NELNU; transcription factor TCP9
STRING	XP_010255575.1	3e-61	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-53	TCP family protein