PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002730-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 445aa MW: 48559.4 Da PI: 5.8321

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002730-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	8.5e-10	280	328	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq NNU_002730-RA 280 NSHSLAERVRREKISERMRYLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 328 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.79E-10	275	332	No hit	No description
SuperFamily	SSF47459	4.97E-17	275	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.402	277	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-17	278	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-7	280	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-9	283	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MGAGDNGNLG FQQRGGSLLN YPSSGMMYMP EKVVGMTMST MPMCKPSNLV DSSFGSAWDP 60 FVSQAQNVEF QASSMASRQI VTSHYGVGSL ENQEISTDPR LVQFPSDANL VNLVPKLPCF 120 GSGSFSDVVS SFGLPPCGQI VNSECPSDCP SSNKENGTEI TSTSPRDGVH ATVFQEDHHH 180 ILDEGTGGPS PNGKKRKRVP ESHSQLDPRQ SEIEPQREVS QEILVGPKEQ DDKKQKKEQN 240 AGTNSRCKLT GKQAKDQSQN GEGPKEDYIH VRARRGQATN SHSLAERVRR EKISERMRYL 300 QDLVPGCNKI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPEINIDIE QILSKDVSKT 360 EILHSRGGSS GILGFAPAMS SSLPQQHITQ PDGAFLIQGS NPQLTTMSQA PSAWEDELQN 420 VMQLGFVPNP TVDNLGQNGC MKVEL

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MGAGDNGNLG FQQRGGSLLN YPSSGMMYMP EKVVGMTMST MPMCKPSNLV DSSFGSAWDP  60
FVSQAQNVEF QASSMASRQI VTSHYGVGSL ENQEISTDPR LVQFPSDANL VNLVPKLPCF  120
GSGSFSDVVS SFGLPPCGQI VNSECPSDCP SSNKENGTEI TSTSPRDGVH ATVFQEDHHH  180
ILDEGTGGPS PNGKKRKRVP ESHSQLDPRQ SEIEPQREVS QEILVGPKEQ DDKKQKKEQN  240
AGTNSRCKLT GKQAKDQSQN GEGPKEDYIH VRARRGQATN SHSLAERVRR EKISERMRYL  300
QDLVPGCNKI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPEINIDIE QILSKDVSKT  360
EILHSRGGSS GILGFAPAMS SSLPQQHITQ PDGAFLIQGS NPQLTTMSQA PSAWEDELQN  420
VMQLGFVPNP TVDNLGQNGC MKVEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00135	DAP	Transfer from AT1G10120	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248337.1	0.0	PREDICTED: transcription factor bHLH74-like isoform X4
Swissprot	Q6NKN9	2e-73	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A1U7Z509	0.0	A0A1U7Z509_NELNU; transcription factor bHLH74-like isoform X4
STRING	XP_010248334.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-71	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]