PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002732-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

AP2

Protein Properties

Length: 702aa MW: 77192 Da PI: 6.5996

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002732-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.9	2.2e-12	322	378	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g NNU_002732-RA 322 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 378 78*****************77776664346655.77****************98 PP
2	AP2	32.2	2.7e-10	457	500	9	55
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g NNU_002732-RA 457 HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 500 5669****988532...5**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.95E-19	322	386	No hit	No description
SuperFamily	SSF54171	2.42E-14	322	388	IPR016177	DNA-binding domain
Pfam	PF00847	1.3E-9	322	378	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-22	323	392	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.359	323	386	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.6E-12	323	387	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.3E-5	324	335	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.3E-5	368	388	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-25	450	514	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.501	450	508	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.4E-15	455	508	IPR001471	AP2/ERF domain
CDD	cd00018	5.45E-21	455	510	No hit	No description
SuperFamily	SSF54171	3.07E-14	457	510	IPR016177	DNA-binding domain
Pfam	PF00847	5.2E-5	458	500	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MKSMNNNNSN NNNWLGFSLS PHMNMEVASD PHHHQQQHNN QTQASSAVVS TAVPTSFFLS 60 PHLNNSGICY GVEGENGALY SHLSVMPLKS DGSLCIMEAL SRSQPEAMVP TSSPKLEDFL 120 GGATMATHQY GSNNRETMPL SLDSMYYQQN AESESNRQHS FHFLQQPFRQ QQQQIEVQQN 180 PYFCGLTGHE MYQAAMEEPK ETQLAECSLQ LPPMAEDGIP GLKSWVARHY SANHALEQKM 240 TDSMDDDGGS GSIGAVGYGD LQSLSLSMSP GSQSSCVTAP QQISPTGTEC VGMETKKRGS 300 AKVGQKQPVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD 360 MEEKAARAYD LAALKYWGPS THINFPLENY REELEEMKNM SRQEYVAHLR RSFFPPSLHF 420 TLVPAFSLLI CKRPSFLLDA AGKAVDSLGE HQCTVEHHQH GRWQARIGRV AGNKDLYLGT 480 FSTQEEAAEA YDIAAIKFRG VNAVTNFDIS RYDVERIVAS NTLLAGELAR RNKVIESKNE 540 AVDHQACVQN SNGEAGLSEA ESGSGSEWKM VLYQGSPQQP TACVEPIDQK PMNIGNYRNP 600 SFSSATLHDL IGIETGNTPQ GVDDSAKLGT HLSNASSLVT TLSSSREGSP DKTGLAVLFA 660 KPPSASSKFI NATPVNSWIP SAQLRPAIGM SHMPVFAAWT DT

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MKSMNNNNSN NNNWLGFSLS PHMNMEVASD PHHHQQQHNN QTQASSAVVS TAVPTSFFLS  60
PHLNNSGICY GVEGENGALY SHLSVMPLKS DGSLCIMEAL SRSQPEAMVP TSSPKLEDFL  120
GGATMATHQY GSNNRETMPL SLDSMYYQQN AESESNRQHS FHFLQQPFRQ QQQQIEVQQN  180
PYFCGLTGHE MYQAAMEEPK ETQLAECSLQ LPPMAEDGIP GLKSWVARHY SANHALEQKM  240
TDSMDDDGGS GSIGAVGYGD LQSLSLSMSP GSQSSCVTAP QQISPTGTEC VGMETKKRGS  300
AKVGQKQPVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD  360
MEEKAARAYD LAALKYWGPS THINFPLENY REELEEMKNM SRQEYVAHLR RSFFPPSLHF  420
TLVPAFSLLI CKRPSFLLDA AGKAVDSLGE HQCTVEHHQH GRWQARIGRV AGNKDLYLGT  480
FSTQEEAAEA YDIAAIKFRG VNAVTNFDIS RYDVERIVAS NTLLAGELAR RNKVIESKNE  540
AVDHQACVQN SNGEAGLSEA ESGSGSEWKM VLYQGSPQQP TACVEPIDQK PMNIGNYRNP  600
SFSSATLHDL IGIETGNTPQ GVDDSAKLGT HLSNASSLVT TLSSSREGSP DKTGLAVLFA  660
KPPSASSKFI NATPVNSWIP SAQLRPAIGM SHMPVFAAWT DT

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248341.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor ANT
Swissprot	Q84Z02	1e-133	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A1U7ZB16	0.0	A0A1U7ZB16_NELNU; AP2-like ethylene-responsive transcription factor ANT
STRING	XP_010248341.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-107	AP2 family protein

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]