PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002747-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 303aa    MW: 32883.2 Da    PI: 4.7124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002747-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83e-3075133259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY  eHnh+
  NNU_002747-RA  75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVITYACEHNHP 133
                    69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3168135IPR003657WRKY domain
PROSITE profilePS5081132.15669135IPR003657WRKY domain
SuperFamilySSF1182905.23E-2670135IPR003657WRKY domain
SMARTSM007742.0E-3574134IPR003657WRKY domain
PfamPF031061.8E-2576133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDGRFSNPFL SEQEDARNMP ERVTELPFSA MINDGKISAT SSPKKSRRAV QKRVVSVPIG  60
DVDGSRLKGE TAPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSRVDPT  120
MLVITYACEH NHPWPASRNS NSNPSSATGA TTFANSSDAA GATTTNSGGS SPASATTETT  180
SISTPKFPPE EPTVFTGQPE IEPDENKFGD LGEEPMMSSD DFSWFPHVTS YSPTVLESSI  240
CAGSSNGDAD MAMILQMREE DESLFSDLGE LPECSSFVFR RGVFEQDEEK CSLRAAPVWG  300
STG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2152135679Disease resistance protein RRS1
5w3x_D3e-2152135679Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297434e-45KP229743.1 UNVERIFIED: Boehmeria nivea WRKY transcription factor-like (WRKY14) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248362.10.0PREDICTED: probable WRKY transcription factor 65
TrEMBLA0A1U7Z7I00.0A0A1U7Z7I0_NELNU; probable WRKY transcription factor 65
STRINGXP_010248362.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.12e-54WRKY DNA-binding protein 69