PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002776-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 432aa    MW: 49055.6 Da    PI: 5.1343
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002776-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.5e-36141042101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+ye+++d  +++++swsengnsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF ++ F +g+++ll++i
  NNU_002776-RA  14 FLTKTYEMVDDLPTNSIVSWSENGNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFGNEDFIRGQRHLLKNI 100
                    9****************************************************************999.........******************* PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    +r+k
  NNU_002776-RA 101 HRRK 104
                    **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.0E-39698IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.21E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDGSQGSSNA PPPFLTKTYE MVDDLPTNSI VSWSENGNSF VVWNPPEFAR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKIDPD QWEFGNEDFI RGQRHLLKNI HRRKPIHSHS QQNQHGNSTG  120
LIESERQELE EEIEKLKHEK SKLILDLQRH TQEQQGIESQ MQSLEQKLHQ LQQRQRQMMA  180
FLCQILQKPG VASNLMKDSE NYNKKRRLPK LDYLYGEADI EENQVVTFQR ERPDAVSMPV  240
INIEPFEKLE SSLNSWETFL NGVGQASGEE MSPVGVALQP STVVLTEMHS SSGDPDINMQ  300
TESPELCQSS PHSRDIHSSL ELAGSTSHGE SMVISSVQFN ADTRSRAPGI DMNSKPAAAS  360
EVQASTERVT GSMTAAQPTG VNDLFWEQFL TETPGSSDTQ EVQSERRDAD VRKIENKPAD  420
NGILWWNIKI RM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-27310319129Heat shock factor protein 1
5d5v_B7e-27310319129Heat shock factor protein 1
5d5v_D7e-27310319129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248394.10.0PREDICTED: heat stress transcription factor A-4b-like
RefseqXP_019052214.10.0PREDICTED: heat stress transcription factor A-4b-like
TrEMBLA0A1U7Z7L10.0A0A1U7Z7L1_NELNU; heat stress transcription factor A-4b-like
STRINGXP_010248394.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-77heat shock transcription factor A4A