PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002816-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 390aa    MW: 43999.1 Da    PI: 4.7641
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002816-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-093343672255
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +yp+++++  LA+++gL+++q+ +WF N+R ++
  NNU_002816-RA 334 WPYPTEADKIALAESTGLDQKQINNWFINQRKRH 367
                    69*****************************885 PP
2ELK39.61.1e-13287308122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK+ LlrKYsgy++sLkqEFs
  NNU_002816-RA 287 ELKDKLLRKYSGYISSLKQEFS 308
                    9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.4E-2088132IPR005540KNOX1
PfamPF037903.7E-2090129IPR005540KNOX1
SMARTSM012564.0E-27138189IPR005541KNOX2
PfamPF037911.3E-24142188IPR005541KNOX2
PfamPF037895.4E-11287308IPR005539ELK domain
SMARTSM011885.4E-8287308IPR005539ELK domain
PROSITE profilePS5121311.226287307IPR005539ELK domain
PROSITE profilePS5007112.519307370IPR001356Homeobox domain
SuperFamilySSF466897.27E-19308381IPR009057Homeodomain-like
SMARTSM003891.6E-13309374IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-27312371IPR009057Homeodomain-like
CDDcd000866.06E-13319371No hitNo description
PfamPF059205.4E-17327366IPR008422Homeobox KN domain
PROSITE patternPS000270345368IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEEMYGLYPS IEYSEQVSMS SGNLVSPVDY QSLLAAGSFR DRIPIFPPDQ LLPAASVISE  60
AASIAPEIQG RREDGGGGVG SVLEDELCEI KAKIASHPRY PRLLEAYIDC QKVGAPEDIA  120
LLLDEIRREY FVCKRDAVSS RLGADPELDQ FMETYCDMLV KYKTDLARPF DEATTFLTEI  180
QMQLSNLCKG PSRSSVSGLS PSVSLIILLL YLDIDICVIY ESCKQNRRLD YRTLWIVRDV  240
DGGCVTFLGV VFRCPGPPDD AAGSSDDEFS GGEIEVPEVH TGAEERELKD KLLRKYSGYI  300
SSLKQEFSKK KKKGKLPKDA RQKLLDWWNI HYKWPYPTEA DKIALAESTG LDQKQINNWF  360
INQRKRHWKP SENMQFAVME NLSGPFFMGD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248543.11e-144PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-114KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1U7ZJP21e-143A0A1U7ZJP2_NELNU; homeobox protein knotted-1-like 6
STRINGXP_010248543.11e-144(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-101KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]