PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002936-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 355aa    MW: 40258.8 Da    PI: 5.2443
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002936-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.21.3e-14184217134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C+ C+ttk p+W+ g  g+k LCnaC+++y+kk+
  NNU_002936-RA 184 CAECHTTKAPQWKGGHAGPKPLCNACWMRYKKKK 217
                    ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.578178214IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-9178228IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-9180219No hitNo description
Gene3DG3DSA:3.30.50.105.0E-11180219IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.91E-10183217No hitNo description
PfamPF003202.4E-11184217IPR000679Zinc finger, GATA-type
PROSITE profilePS5152516.462274355IPR027353NET domain
PfamPF170353.5E-18283345IPR027353NET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSEALRISVA HAEEKEVGPN YFGYYIREIL ELSSQKEDDL LPLSFEASML ASKTYTKENA  60
GDIIDPNCNG RDANSLIGSN SLFSNSIGYG LPDIKRERLK ASLKQAVLAL SQEVDEDIFY  120
RNDSMVLQFP MRLSLWENKH AVVSNLREPI AVPLLAQGSE SGDMSNAYSD AVLSSQLSDT  180
KKRCAECHTT KAPQWKGGHA GPKPLCNACW MRYKKKKMSF SDLNREEKES EEVKDDLLVL  240
LDNCGPRAVE TVKRYSNELS AKLGHMEQQL EELLDIVMSK CRPMSLTEKQ ELRNLIQKMP  300
PKNLDRIVEI VQRNKQEESH SCKEISIELE KEDNATLWRL YYYVEAVANA EKLSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248715.10.0PREDICTED: uncharacterized protein LOC104591545 isoform X1
RefseqXP_010248716.10.0PREDICTED: uncharacterized protein LOC104591545 isoform X1
RefseqXP_010248717.10.0PREDICTED: uncharacterized protein LOC104591545 isoform X1
TrEMBLA0A1U7Z5Z90.0A0A1U7Z5Z9_NELNU; uncharacterized protein LOC104591545 isoform X1
STRINGXP_010248715.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-13GATA transcription factor 16