PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002974-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 1321aa    MW: 147365 Da    PI: 8.3428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002974-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006112051230123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                     y+C    C++ Fs+k +L+ H r+ +
  NNU_002974-RA 1205 YQCDmeGCTMGFSSKQELVLHKRNiC 1230
                     99********************9877 PP
2zf-C2H211.30.001112301252323
                     ET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                     C+   Cgk F ++ +L++H r+H
  NNU_002974-RA 1230 CSvkGCGKKFFSHKYLVQHRRVH 1252
                     77779****************99 PP
3zf-C2H213.50.0002212881314123
                     EEET..TTTEEESSHHHHHHHHHH..T CS
        zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                     y+C+   Cg++F+  s++ rH r+  H
  NNU_002974-RA 1288 YVCHepGCGQTFRFVSDFSRHKRKtgH 1314
                     99********************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005456.4E-182263IPR003349JmjN domain
PROSITE profilePS5118313.9662364IPR003349JmjN domain
PfamPF023755.0E-142457IPR003349JmjN domain
SMARTSM005582.8E-47190359IPR003347JmjC domain
PROSITE profilePS5118433.078193359IPR003347JmjC domain
SuperFamilySSF511972.5E-26204367No hitNo description
PfamPF023731.5E-36223342IPR003347JmjC domain
SMARTSM003551012051227IPR015880Zinc finger, C2H2-like
SMARTSM003550.01512281252IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.5712281257IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-512291251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012301252IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-912441286No hitNo description
Gene3DG3DSA:3.30.160.601.6E-912521280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001412581282IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.74112581287IPR007087Zinc finger, C2H2
PROSITE patternPS00028012601282IPR007087Zinc finger, C2H2
SuperFamilySSF576673.71E-812761310No hitNo description
Gene3DG3DSA:3.30.160.603.4E-912811311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2512881314IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78312881319IPR007087Zinc finger, C2H2
PROSITE patternPS00028012901314IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1321 aa     Download sequence    Send to blast
MAAVSAAESP PEIFPWLKTL PLAPEYHPTV AEFQDPIAYI LKIEKEASKF GICKIVPPLP  60
PPPKKTAIAN LNRSLAARSP NSNPKSPPTF TTRQQQIGFC PRKSRPVQKP VWQSGETYTL  120
QEFEAKAKQF EKTHLRKTGK KALSPLEIET LFWKASVDKP FSVEYANDMP GSAFVPVNGK  180
KWRESGEATT VGDTAWNMRG VSRAKGSLLR FMKEEIPGVT SPMVYIAMMF SWFAWHVEDH  240
DLHSLNYLHM GSAKTWYGVP REAAVAFEEV VRVHGYGGEV NPLVTFAILG EKTTVMSPEV  300
LVSLGIPCCR LVQNAGEFVV TFPRAYHSGF SHGFNCGEAA NIATPEWLKV AKEAAIRRAS  360
INYPPMVSHF QLLYSLALAL CSSIPTSIGT EPRSSRLKDK KRGEGDAMVK ELFVQNIMHN  420
NDLLHILLEK GSSCVLLPHS SDMSVCSNLR VGSQKKVKPR LPLSLCSPDE TMEASKDLLS  480
EDAMRERNAH LRHLSGFYSV KGKSSSVYGQ KSLHALCGND DLCSSTTEKQ STDTERESNV  540
KGDGLVDQGL FSCVTCGILT FACTAIIQPR EAAAQYLMST DCSVFNDWIV GSEVTSDRYT  600
VSVGDASMTG LNSCSGQMGK GGLYDVPVQS GDYQFEVAGG SSKVAADAEA QKGISSLDLL  660
AVAYDSSDSE DDQDKTEKPV FSDENDFRDS SGELGSAQSD PPSKHKSPLL PEPNHKDEAT  720
SNTVSYVNEV SVQDYASERT PGRPSATFMN NQQSIDIPLE SDRENLVTLE SNNSDDTYRD  780
PLALSRRVVS RSVETCYRDG KLENSESGPQ YRPSTSSNAI SNCLPLANLA ERAEFSDADK  840
SVKGKASSLM QRPDSDSSRL HIFCLEHAVE VEKQLHPIGG VHVLLLCHPE YLKVEAEAKL  900
LAEEMGIDYI WKDVPFREAT EEDQQRIRLA LDDDEVIPTN GDWAAKLGIN LYYSAILSYT  960
PFYSKQMPYN SVIYKAFGRS SPVNSPTKPK VSGKRPGKQK KILVAGRWCG KVWMSNQVHP  1020
FLGQIDDYEE ELAKSYSTGA MPKEKPERKL DINCQEKPDF SEKKSSGGIN TMVAKKSGRK  1080
RKRFEKGAIK KQKCLQRENH KATVDEPPEP DTPSGVKNLR TVRSGQMRQE TIRHRNDCEN  1140
NIRWEDSYEK DDLEGGPSTR LRKRPPKKPS REVKEMMHEK QTKKKKAKKA PSNNEIDMKD  1200
EEAEYQCDME GCTMGFSSKQ ELVLHKRNIC SVKGCGKKFF SHKYLVQHRR VHMDDRPLKC  1260
PWKGCKMTFK WAWARTEHIR VHTGARPYVC HEPGCGQTFR FVSDFSRHKR KTGHSVKKGK  1320
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A9e-77163838356Transcription factor jumonji (Jmj) family protein
6ip4_A9e-77163838356Arabidopsis JMJ13
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248780.10.0PREDICTED: lysine-specific demethylase REF6 isoform X2
TrEMBLA0A1U7Z6600.0A0A1U7Z660_NELNU; lysine-specific demethylase REF6 isoform X2
STRINGXP_010248779.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6