PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002988-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Protein Properties

Length: 524aa MW: 58700.3 Da PI: 6.0266

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002988-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.8	1.1e-14	456	521	29	96
-..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + +e k + l+d+ r+W v + ++g vl++GW+ F++an++++gD++vF l+++se+ + v+v NNU_002988-RA 456 SRTERKIIFLQDSAMRVWPVLY--HERPGFKVLASGWEAFAEANNIQQGDVCVFGLKNESEGLYQVRV 521 334667999***********..******************************998888677776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.139	426	524	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0018	429	522	IPR003340	B3 DNA binding domain
CDD	cd10017	1.31E-11	434	521	No hit	No description
Pfam	PF02362	5.2E-12	436	521	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.88E-13	438	521	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-13	457	514	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MEALGVRNYT YLSSRVGWPV VAGFLPPKFV RELASLVGKK TCLEDSNGER WKIFDKSTCE 60 KLSFSERTNV TTNGTTGKRK RAKSKHPSDG FPTEARKSAP TNGPCKIIDR VSINEQGSSS 120 TVISSDIEII ECDAKDMEKV PVANGNKRPQ DLPKVDCAEV PYYMIDRNSI TEQGESFSLF 180 DLSKFEMLGS TSDCKKSNKI SVNVEKEKCP YGDERSEIPP APLEQGRVDK NPVADESSER 240 PQTLLEEGRF HNDPVADTNR AAPFDGSGFK MSEEKWNAED MPRVPQITES CYQNSPTLPQ 300 TTCLVDLVEN ERGNEILNRA INQGAGKCPE RKSQEEHTPF VGISRSICPI TWTSDHSVTV 360 AGKKLPRVVK EEHVEITKEV HAAKEPKVIK EEFEENAYST LKDQVKVCKM VKTEIVDSID 420 LPSPNLGDFC IPVSTVTQSW LELPRETQPL AYRVRSRTER KIIFLQDSAM RVWPVLYHER 480 PGFKVLASGW EAFAEANNIQ QGDVCVFGLK NESEGLYQVR VAKK

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MEALGVRNYT YLSSRVGWPV VAGFLPPKFV RELASLVGKK TCLEDSNGER WKIFDKSTCE  60
KLSFSERTNV TTNGTTGKRK RAKSKHPSDG FPTEARKSAP TNGPCKIIDR VSINEQGSSS  120
TVISSDIEII ECDAKDMEKV PVANGNKRPQ DLPKVDCAEV PYYMIDRNSI TEQGESFSLF  180
DLSKFEMLGS TSDCKKSNKI SVNVEKEKCP YGDERSEIPP APLEQGRVDK NPVADESSER  240
PQTLLEEGRF HNDPVADTNR AAPFDGSGFK MSEEKWNAED MPRVPQITES CYQNSPTLPQ  300
TTCLVDLVEN ERGNEILNRA INQGAGKCPE RKSQEEHTPF VGISRSICPI TWTSDHSVTV  360
AGKKLPRVVK EEHVEITKEV HAAKEPKVIK EEFEENAYST LKDQVKVCKM VKTEIVDSID  420
LPSPNLGDFC IPVSTVTQSW LELPRETQPL AYRVRSRTER KIIFLQDSAM RVWPVLYHER  480
PGFKVLASGW EAFAEANNIQ QGDVCVFGLK NESEGLYQVR VAKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248803.1	0.0	PREDICTED: B3 domain-containing protein Os01g0905400-like isoform X1
TrEMBL	A0A1U7ZKC2	0.0	A0A1U7ZKC2_NELNU; B3 domain-containing protein Os01g0905400-like isoform X1
STRING	XP_010248803.1	0.0	(Nelumbo nucifera)