PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002992-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARR-B
Protein Properties Length: 593aa    MW: 66367.7 Da    PI: 5.2183
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002992-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.43.8e-24197250155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lmkv+ Lt+e+v+SHLQkYRl
  NNU_002992-RA 197 KARVVWSVDLHQKFVDAVDQI-GFDKVGPKKILDLMKVPWLTRENVASHLQKYRL 250
                    68*******************.9*******************************8 PP
2Response_reg79.41.2e-26191271109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+vdD+p+ +++l+++l+k  y ev+++  +++al++l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga
  NNU_002992-RA  19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALDMLRERKdrFDIVINDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGA 112
                    89*********************.***************888778**********************6644.8*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     d+l Kp+ ++el++
  NNU_002992-RA 113 CDYLLKPVRMKELRN 127
                    ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.5E-4416169No hitNo description
SuperFamilySSF521724.27E-3516143IPR011006CheY-like superfamily
SMARTSM004482.3E-3017129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.90418133IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.1E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.14E-2920133No hitNo description
SuperFamilySSF466891.16E-16195254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-27196255IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-22197250IPR006447Myb domain, plants
PfamPF002491.5E-6199249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MENGFASPRG DAFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCGLAR DALDMLRERK  60
DRFDIVINDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPV  120
RMKELRNIWQ HVFRKKIHEV REIENHDDVQ LIRGGSEEFE DGQLLSGGDL TSPKKRKDTE  180
NKEHEDQEFN DPSAVKKARV VWSVDLHQKF VDAVDQIGFD KVGPKKILDL MKVPWLTREN  240
VASHLQKYRL YLSRLQKQNQ PKSSFCGTKQ SDFTSKDPTG SFGIQNSIIM RQNSAGNSSF  300
GYCGNKILVQ DVGSEIYESD LKGVISFLPV TEPKKALAAD ASILQKSSNG SGIGPTHSFG  360
SLGPDVKYNI QSPNCWNGEI PVMQFAQPKQ EQDPYRVLED SYAPLPPSGG PRDQIQANGL  420
QPALSINPRT SVTENSKAIT TEIEPLCTEY GSNHAGDISR KRQRIDSFSV GGDTDVANAR  480
AFGYMSTSNG SPPMKNHSFD QIYINNWDSP QPNIIPEGGS ILISPHEDLE IHSLQGYGYT  540
ENVGFNNTEF LTFEHPVPIT EPSNHLIDGL RFNYDYPCDS MEYPLIDRSL FIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-18193255163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248808.10.0PREDICTED: two-component response regulator ORR26-like isoform X1
TrEMBLA0A1U7ZKC70.0A0A1U7ZKC7_NELNU; two-component response regulator ORR26-like isoform X1
STRINGXP_010248808.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-122response regulator 11