PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003134-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family RAV
Protein Properties Length: 366aa    MW: 41939.1 Da    PI: 6.7221
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003134-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51.1e-104289255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   ++kGV     +g W A+I+       + +r++lg+f +++eAa a++ a+ kl+g
  NNU_003134-RA 42 RFKGVVLQQ-NGHWGAQIYT------NhQRIWLGTFKSEKEAAMAYDSAAIKLRG 89
                   589998777.8******988......44**********99*************98 PP
2B390.61.2e-28166270188
                    EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                    f+k+ltpsdv+k++rlv+pkk+a ++                 gg+   +++l+++d++ +sW+++++y+k+s+++v+t+GW++Fvk+++Lk++D+
  NNU_003134-RA 166 FQKELTPSDVGKLNRLVIPKKYAVKYfppvpehsseeeddhdqGGSGVDDVQLVFYDKWMKSWKFRYCYWKSSQSFVFTRGWSRFVKEKKLKAKDI 261
                    99****************************9998877777776444448999******************************************** PP

                    EEEEE-SSS CS
             B3  80 vvFkldgrs 88 
                    ++F++ +r+
  NNU_003134-RA 262 ITFYRCERR 270
                    ****76553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-74289IPR001471AP2/ERF domain
PROSITE profilePS5103217.5044297IPR001471AP2/ERF domain
CDDcd000181.95E-234299No hitNo description
SMARTSM003804.7E-2242103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-174397IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-164398IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.101.2E-32163271IPR015300DNA-binding pseudobarrel domain
CDDcd100178.97E-27165274No hitNo description
SuperFamilySSF1019364.97E-27165269IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-25166286IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237166288IPR003340B3 DNA binding domain
PfamPF023622.7E-26166271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MISDTGISAL AEGSDSNSSN NPFRPSKRRR HDEDNNPTSS VRFKGVVLQQ NGHWGAQIYT  60
NHQRIWLGTF KSEKEAAMAY DSAAIKLRGG DSHRNFPWTN LSLLEPTFQE LHTTESVLNM  120
IKEGTYQSKF AEYVRTRSLG MDNEIGLNLV RGRVNNERGF LRQQLFQKEL TPSDVGKLNR  180
LVIPKKYAVK YFPPVPEHSS EEEDDHDQGG SGVDDVQLVF YDKWMKSWKF RYCYWKSSQS  240
FVFTRGWSRF VKEKKLKAKD IITFYRCERR EGCFGEEPTF CMIDVEYNES QGVDSAGLMG  300
MHVGLQLQLG LSLPPNYEFG SSDREYCSKL PEDDKTPTIL ESPELPPGPP REEQKDVITL  360
FGVRIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-28162267496B3 domain-containing transcription factor NGA1
5os9_B6e-28162267496B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249446.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-102RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A1U7ZA230.0A0A1U7ZA23_NELNU; AP2/ERF and B3 domain-containing transcription factor At1g50680-like
STRINGXP_010249446.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.15e-98RAV family protein