PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003139-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family SBP
Protein Properties Length: 417aa    MW: 46271.9 Da    PI: 7.1494
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003139-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.5e-41114190278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    C v+gC++dl+++++yhrrhkvCe hsk+p+v+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+++
  NNU_003139-RA 114 CLVDGCKSDLTNCRDYHRRHKVCELHSKTPKVMVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPHP 190
                    **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33106175IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.958111188IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-38112193IPR004333Transcription factor, SBP-box
PfamPF031104.7E-30114187IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MRRRGECEEG ERIKEEDKGK IFMDWDLKTP SWDLAELERE SIPNIAPLVG SSSFQGQNTK  60
GDCSVDLKLG RLGDFGDGSL DKLKDPRIST VLAPPSGSTK RSRAPSNGTQ TVSCLVDGCK  120
SDLTNCRDYH RRHKVCELHS KTPKVMVGGQ EQRFCQQCSR FHLLVEFDEV KRSCRKRLDG  180
HNRRRRKPHP ESLSMNSGSL FTNHQGSRFL PFTTTQMFPT AVVSPPWSGV VKTEEDTTPY  240
NRHQQLHFID RQNTFTGSFS HSYRGKQFPF LQSNDVTLIN RMPPESSVCQ PLLNSIASSE  300
SEGSRKMFSD GLTRVLDSDC ALSLLSSPPM QTSGISLNHV VQPDPIPIAQ PLVPVLQYSG  360
VGRYPCSQGV EDEQASVLVP DASDVDALHC HGVIHLGSES DGSTQNGGPQ TLPFSWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-271141871184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170187KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249063.10.0PREDICTED: squamosa promoter-binding-like protein 18
RefseqXP_010249064.10.0PREDICTED: squamosa promoter-binding-like protein 18
RefseqXP_010249065.10.0PREDICTED: squamosa promoter-binding-like protein 18
RefseqXP_010249066.10.0PREDICTED: squamosa promoter-binding-like protein 18
RefseqXP_010249067.10.0PREDICTED: squamosa promoter-binding-like protein 18
RefseqXP_010249068.10.0PREDICTED: squamosa promoter-binding-like protein 18
RefseqXP_019052302.10.0PREDICTED: squamosa promoter-binding-like protein 18
SwissprotQ0J0K16e-83SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A1U8Q0Y10.0A0A1U8Q0Y1_NELNU; squamosa promoter-binding-like protein 18
STRINGXP_010249063.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.18e-62SBP family protein