PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003201-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 233aa    MW: 26811.4 Da    PI: 4.4966
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003201-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.1e-12591402199
                    HH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  21 kfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    + ae+h   ++++e++ + + d +g r+W++k+++  +++s++y+l+ +  eFvk +gL+ gDf+++++d+ +++++v++++++
  NNU_003201-RA  59 RAAEAHlpILDTKEGMFIDMDDMDGlRVWNFKYRFwpNNNSRMYILE-NIGEFVKMHGLQLGDFIMLYRDD-QNQKYVIRARKA 140
                    56777788556678899*****9999*******99788888888888.********************665.777788888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.73E-1648139No hitNo description
SMARTSM010193.5E-750141IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-1858151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-1459138IPR015300DNA-binding pseudobarrel domain
PfamPF023627.2E-1060140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGGKEADDRM NRMKLREDRR RLGKEKELLS LEEAISVDGD IEVGKLRFLL QKELRNSDRA  60
AEAHLPILDT KEGMFIDMDD MDGLRVWNFK YRFWPNNNSR MYILENIGEF VKMHGLQLGD  120
FIMLYRDDQN QKYVIRARKA SDQDIFSEST RNSFFGISTI KDCYVPEVEV NKPSYLHVNF  180
PTVDDIGLPF PCDNDFSDAF PIALSGGSMV DFPGLEPIAN FGSVENLSLD DFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-43461441110B3 domain-containing transcription factor FUS3
6j9b_D7e-43461441110B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249174.11e-144PREDICTED: B3 domain-containing transcription factor FUS3-like isoform X4
TrEMBLA0A1U7ZL811e-142A0A1U7ZL81_NELNU; B3 domain-containing transcription factor FUS3-like isoform X4
STRINGXP_010249171.11e-138(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-46B3 family protein