PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003274-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 285aa    MW: 30802.7 Da    PI: 4.4397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003274-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-194189355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  NNU_003274-RA 41 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 89
                   56******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-3440103IPR001471AP2/ERF domain
PROSITE profilePS5103220.7194097IPR001471AP2/ERF domain
CDDcd000183.02E-304096No hitNo description
SuperFamilySSF541715.82E-214198IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-294197IPR001471AP2/ERF domain
PRINTSPR003673.6E-84152IPR001471AP2/ERF domain
PfamPF008476.4E-124389IPR001471AP2/ERF domain
PRINTSPR003673.6E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDFTNTATNP SSSSSSSPSM FFQEKKSKKK QHQQQESTGR FLGVRRRPWG RYAAEIRDPS  60
TKERHWLGTF DTAEEAALAY DRAARSMRGS RARTNFVYSD MPPGSSITSI ISPDETQHDL  120
SALFVPPPEN DPTTQLYFCQ ESGNACNFST GYPAVSAGDS WIPAASVSEP SVVGAAGVSS  180
QPHQFYDSTE LPPLPSDVSS CFSSSNVPLS GYDMGEGAWP EATSFLGFSE QMTTNGFETV  240
ETGSCLGFDS SEFVHSPLFG RMPPVSDAVS TIADGFDLGA SAYFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-204196359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249334.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A1U7Z9T70.0A0A1U7Z9T7_NELNU; ethylene-responsive transcription factor LEP-like
STRINGXP_010249334.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-22ERF family protein