PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003323-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 245aa    MW: 27953.8 Da    PI: 10.0431
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003323-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind37.28e-12138184248
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT- CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs 48 
                    Flkk+y++++d ++++++ ws+  nsf+ +d+++f++++LpkyF  +
  NNU_003323-RA 138 FLKKTYDMVKDLATNSIVFWSKACNSFIFWDSHKFSTNLLPKYFAEN 184
                    9*******************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.40.7901.4E-2312109IPR008978HSP20-like chaperone
SuperFamilySSF497641.36E-1629108IPR008978HSP20-like chaperone
PROSITE profilePS0103111.1955118IPR002068Alpha crystallin/Hsp20 domain
PfamPF000114.3E-955106IPR002068Alpha crystallin/Hsp20 domain
Gene3DG3DSA:1.10.10.104.2E-12132185IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.0E-5134234IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.02E-7136184IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.1E-9138185IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSLISNIFGE RRSNIFNPFS LDIWDPFKGF PFSTTLSSVP NSARKTFAFV NARIDWKETP  60
EAHVFKADLP GLKKEEVKVE VKEGRVLQIS GERSREHEEN DKWNRRNAKR GLDLLVLPLR  120
MMPLQPMEGL HDAGPPLFLK KTYDMVKDLA TNSIVFWSKA CNSFIFWDSH KFSTNLLPKY  180
FAENTRSVMS LGIPPPYNRV YDSERKEATG GGLTKAANSR ERGREWTEPN RKKKGREDEG  240
EGGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gme_A8e-2411105598HEAT SHOCK PROTEIN 16.9B
1gme_B8e-2411105598HEAT SHOCK PROTEIN 16.9B
1gme_C8e-2411105598HEAT SHOCK PROTEIN 16.9B
1gme_D8e-2411105598HEAT SHOCK PROTEIN 16.9B
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219232RERGREWTEPNRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-21heat shock transcription factor A2