PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_003368-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 344aa MW: 37085.6 Da PI: 7.1701

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_003368-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.1e-13	103	147	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ Iar + Rt+ q+ s+ qky NNU_003368-RA 103 PWTEEEHRLFLMGLQKLGKGDWRGIARNFVMSRTPTQVASHAQKY 147 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.966	96	152	IPR017930	Myb domain
SuperFamily	SSF46689	6.43E-17	98	153	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-18	99	151	IPR006447	Myb domain, plants
SMART	SM00717	1.2E-11	100	150	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-12	100	146	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-11	103	147	IPR001005	SANT/Myb domain
CDD	cd00167	8.50E-10	103	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MTRRCSHCSN NGHNSRTCPM RGGLKLFGVR LTDGSIKKSA SMGNLSSAHY YSSSSAAASA 60 NSSSPPSDPL RDPTPVADGY VSDDPVHASC SSNCRSERKK GVPWTEEEHR LFLMGLQKLG 120 KGDWRGIARN FVMSRTPTQV ASHAQKYFIR QSNSTRRKRR SSLFDMVPDM SIDPTTVTEE 180 QSLLHSSQAG ESENVNLLPP LHLSLDQECE PMETTSDETV KADEGVTSSN ILPMIPTLFP 240 AYLPAAFPFW PPSLAPAVGE NVGEISHHQV LKPTPIHSKD PVNVDELVGL STLSLGDVAT 300 GRMEPSALTL QLIGAPSKQS AFHANPPISR SDLSNSGSSA IHAV

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MTRRCSHCSN NGHNSRTCPM RGGLKLFGVR LTDGSIKKSA SMGNLSSAHY YSSSSAAASA  60
NSSSPPSDPL RDPTPVADGY VSDDPVHASC SSNCRSERKK GVPWTEEEHR LFLMGLQKLG  120
KGDWRGIARN FVMSRTPTQV ASHAQKYFIR QSNSTRRKRR SSLFDMVPDM SIDPTTVTEE  180
QSLLHSSQAG ESENVNLLPP LHLSLDQECE PMETTSDETV KADEGVTSSN ILPMIPTLFP  240
AYLPAAFPFW PPSLAPAVGE NVGEISHHQV LKPTPIHSKD PVNVDELVGL STLSLGDVAT  300
GRMEPSALTL QLIGAPSKQS AFHANPPISR SDLSNSGSSA IHAV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249506.1	0.0	PREDICTED: uncharacterized protein LOC104592058
Swissprot	Q7XC57	1e-105	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A1U7Z7Y8	0.0	A0A1U7Z7Y8_NELNU; uncharacterized protein LOC104592058
STRING	XP_010249506.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	8e-94	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]