PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_003392-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HD-ZIP

Protein Properties

Length: 768aa MW: 84723 Da PI: 6.6287

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_003392-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	19	77	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ NNU_003392-RA 19 KYVRYTPEQVEALERFYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77 5679*****************************************************97 PP
2	START	170.5	1.1e-53	163	371	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+r++g+v +++ v+e+l+d++ W ++++++++l+v+ +g g+++l + NNU_003392-RA 163 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCTGVAARVCGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTGngGTIELLY 257 789*****************************************************.8888888888*********************** PP EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS START 96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187 ++l+a+++l+p Rdf+ +Ry+ l + ++v++++S++++q p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl++ +++++lr+l++s NNU_003392-RA 258 MQLYAPTTLAPpRDFWLLRYTSVLDDSSLVVCERSLSNTQGGPSmpiVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEAFSVPEVLRPLYES 353 ***************************************999999******************************************* PP HHHHHHHHHHHHTXXXXX CS START 188 glaegaktwvatlqrqce 205 +++ +++ ++a+l+++++ NNU_003392-RA 354 STILAQRATMAALRQLRQ 371 ************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.5E-19	10	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.742	14	78	IPR001356	Homeobox domain
SMART	SM00389	1.3E-15	16	82	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	18	81	IPR009057	Homeodomain-like
CDD	cd00086	2.33E-17	19	79	No hit	No description
Pfam	PF00046	4.0E-16	20	77	IPR001356	Homeobox domain
CDD	cd14686	1.67E-6	71	110	No hit	No description
PROSITE profile	PS50848	25.829	153	381	IPR002913	START domain
CDD	cd08875	1.70E-77	157	373	No hit	No description
SMART	SM00234	9.9E-39	162	372	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	5.3E-21	162	368	IPR023393	START-like domain
SuperFamily	SSF55961	4.26E-36	162	374	No hit	No description
Pfam	PF01852	5.5E-51	163	371	IPR002913	START domain
Pfam	PF08670	2.7E-9	721	766	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence Send to blast
MMAVATYCNE FKAGMDNGKY VRYTPEQVEA LERFYHECPK PSSIRRQQLI RECPILSNIE 60 PKQIKVWFQN RRCREKQRKE ALRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYENSYFR 120 QQTQNTTLAT TDASCESVVT NGQHHLTPQH LPRDASPAGL LSIAEETLTE FLSKATGTAV 180 EWVQMPGMKP GPDSVGIVAI SHGCTGVAAR VCGLVGLEPT RVAEILKDRP SWFRDCRAVD 240 VLNVLPTGNG GTIELLYMQL YAPTTLAPPR DFWLLRYTSV LDDSSLVVCE RSLSNTQGGP 300 SMPIVQHFVR AEMLPSGYLI RPCEGGGSII HIVDHMDLEA FSVPEVLRPL YESSTILAQR 360 ATMAALRQLR QIAQEVSRST VTGWGRRPAA LRALSQRLSR GFNEALNGFT DEGWSMMGND 420 GLDDVTILLN SSPGKIMGAN LAFANGFPVM NNAILCAKAS MLLQNVPPAI LLRFLREHRS 480 EWADSNIDAY SAAALKVGSC SMPVFRVASF GGQVILPLAH TIEHEEASDC YVRLCSDYFV 540 SDALILTCKQ FLEIIKLESV GPCQDNSVMP NDVFLLQHYS GVDENAVGMC SELIFAPIDA 600 AFSDDAPLLP SGFRIIPLDS GVDASSPNRT LDLASALEVG ATGSRVSGDY SGNSNSTRSV 660 MTIAFQFPFE SHLHENVASM ARQYVRSIIS SVQRVALALS PSHLSSHSGL RPPPGTPEAH 720 TLACWICRSY RNYLGMELLK PSNEGSESIL KTLWHHQDAI MCCTLKYL

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence Send to blast

MMAVATYCNE FKAGMDNGKY VRYTPEQVEA LERFYHECPK PSSIRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ALRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYENSYFR  120
QQTQNTTLAT TDASCESVVT NGQHHLTPQH LPRDASPAGL LSIAEETLTE FLSKATGTAV  180
EWVQMPGMKP GPDSVGIVAI SHGCTGVAAR VCGLVGLEPT RVAEILKDRP SWFRDCRAVD  240
VLNVLPTGNG GTIELLYMQL YAPTTLAPPR DFWLLRYTSV LDDSSLVVCE RSLSNTQGGP  300
SMPIVQHFVR AEMLPSGYLI RPCEGGGSII HIVDHMDLEA FSVPEVLRPL YESSTILAQR  360
ATMAALRQLR QIAQEVSRST VTGWGRRPAA LRALSQRLSR GFNEALNGFT DEGWSMMGND  420
GLDDVTILLN SSPGKIMGAN LAFANGFPVM NNAILCAKAS MLLQNVPPAI LLRFLREHRS  480
EWADSNIDAY SAAALKVGSC SMPVFRVASF GGQVILPLAH TIEHEEASDC YVRLCSDYFV  540
SDALILTCKQ FLEIIKLESV GPCQDNSVMP NDVFLLQHYS GVDENAVGMC SELIFAPIDA  600
AFSDDAPLLP SGFRIIPLDS GVDASSPNRT LDLASALEVG ATGSRVSGDY SGNSNSTRSV  660
MTIAFQFPFE SHLHENVASM ARQYVRSIIS SVQRVALALS PSHLSSHSGL RPPPGTPEAH  720
TLACWICRSY RNYLGMELLK PSNEGSESIL KTLWHHQDAI MCCTLKYL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249539.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
Refseq	XP_010249540.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
Refseq	XP_010249542.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
Refseq	XP_010249543.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
Refseq	XP_010249544.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A1U7ZM13	0.0	A0A1U7ZM13_NELNU; homeobox-leucine zipper protein ATHB-15-like isoform X1
STRING	XP_010249538.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.3	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]