PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_003426-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 397aa MW: 44989.6 Da PI: 4.6298

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_003426-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.8	3.4e-07	214	254	8	53
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 Er+RR+r+ + + Lr+l+P+ +K++K ++L A Y+k NNU_003426-RA 214 SERNRRKRLSQQLLALRSLVPNI-----TKMDKRSVLVDALSYLKG 254 6*******************7.....6************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.392	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-12	211	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-7	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.68E-6	213	253	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-9	213	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-5	214	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MKEVGDFSFQ EENQPTIETT PNPTTRYVDI ISSWLDQDDT YNPSSSFPQE LQDLQMLDDP 60 LFQFITSDLD SNLFSLQPPR PHTHESLLDF PSFDPGRPST ESVQISVDTT LITHNHLEVD 120 VRDAFVDDGN YLSLLIAPEE SQDSIDDHVF QSIMDSTTPT ALDSVEVDTP QPINTNAVDH 180 ATATEPQRYV EEDDEEATDD DPKPSVPSCK NLVSERNRRK RLSQQLLALR SLVPNITKMD 240 KRSVLVDALS YLKGIHEETA QLQKELKQQQ PPSLINLPET WPDNPIPNPR NRRGSASNIT 300 SRPKTKIIEM ETEKMEDRRY VVKITCKGST GVGGEILRVV ESLGFEITYT ALERIKPQLL 360 LTTVFVRVRK PMKMTEKKLK NYIASTALKL GLTMQKH

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MKEVGDFSFQ EENQPTIETT PNPTTRYVDI ISSWLDQDDT YNPSSSFPQE LQDLQMLDDP  60
LFQFITSDLD SNLFSLQPPR PHTHESLLDF PSFDPGRPST ESVQISVDTT LITHNHLEVD  120
VRDAFVDDGN YLSLLIAPEE SQDSIDDHVF QSIMDSTTPT ALDSVEVDTP QPINTNAVDH  180
ATATEPQRYV EEDDEEATDD DPKPSVPSCK NLVSERNRRK RLSQQLLALR SLVPNITKMD  240
KRSVLVDALS YLKGIHEETA QLQKELKQQQ PPSLINLPET WPDNPIPNPR NRRGSASNIT  300
SRPKTKIIEM ETEKMEDRRY VVKITCKGST GVGGEILRVV ESLGFEITYT ALERIKPQLL  360
LTTVFVRVRK PMKMTEKKLK NYIASTALKL GLTMQKH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249625.1	0.0	PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBL	A0A1U7ZNG8	0.0	A0A1U7ZNG8_NELNU; transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRING	XP_010249625.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.2	7e-12	bHLH family protein