PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_003427-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 385aa MW: 43504.9 Da PI: 4.6942

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_003427-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.9	6.6e-07	199	240	7	53
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + Er+RR+r+ + + Lr l+P+ +K++K ++L A Y+k NNU_003427-RA 199 ISERNRRKRLSQQLLALRALVPNI-----TKMDKRSVLVDALSYLKG 240 57*******************7.....6************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.182	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.11E-12	197	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.0E-7	198	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.64E-6	199	239	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.4E-9	199	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-4	199	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
METEVGAFSF QEQNQATLNP RPRYLDMISS WLDQDDIYNP TFPQEVEMLN DPLFQFITSD 60 LESNLFSHPP RPDTDESLVH LHDFDPQPSP ESVQSVDTKL TQNQMLVDVC DAFLDSDYLG 120 LIAPAESQGS IDDHVFQSIM DSTTPTLVDS VEVDTPQPIN TNAVDNATTT EPQPYVEEDD 180 EEATDDDPKP GVPSCKNLIS ERNRRKRLSQ QLLALRALVP NITKMDKRSV LVDALSYLKG 240 IHEEIARLQK GVKQQQQPKT LNNLPETWPD NPTSIPRTRR RGSASNATSR TKPHIIEMET 300 EKMEDRRFIV KITCKGGSGA GGEVLRVMES LGFEITYTSL ERIKPQFIQT TVFFRVRKPV 360 KMTEEKLKNY IASTALKSGL SIQKH

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

METEVGAFSF QEQNQATLNP RPRYLDMISS WLDQDDIYNP TFPQEVEMLN DPLFQFITSD  60
LESNLFSHPP RPDTDESLVH LHDFDPQPSP ESVQSVDTKL TQNQMLVDVC DAFLDSDYLG  120
LIAPAESQGS IDDHVFQSIM DSTTPTLVDS VEVDTPQPIN TNAVDNATTT EPQPYVEEDD  180
EEATDDDPKP GVPSCKNLIS ERNRRKRLSQ QLLALRALVP NITKMDKRSV LVDALSYLKG  240
IHEEIARLQK GVKQQQQPKT LNNLPETWPD NPTSIPRTRR RGSASNATSR TKPHIIEMET  300
EKMEDRRFIV KITCKGGSGA GGEVLRVMES LGFEITYTSL ERIKPQFIQT TVFFRVRKPV  360
KMTEEKLKNY IASTALKSGL SIQKH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249626.1	0.0	PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBL	A0A1U7ZE54	0.0	A0A1U7ZE54_NELNU; transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRING	XP_010249626.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.2	1e-15	bHLH family protein