PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_003442-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 343aa MW: 37878.1 Da PI: 6.511

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_003442-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00044	208	246	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq NNU_003442-RA 208 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 246 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.033	196	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-10	206	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.43E-6	206	250	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-7	210	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MNRGVLQSSP VQQMMAGSPN WWSINNMRPP PQQPSPLLPS PSSFFPQYTP PPSSLPVTYW 60 NDNQDLPESW SQLLLGGLVG EEDRAGLNHF HHAKKMENWE DQLLYTSQNV PVVDVKQEVS 120 ENGYVYGHGN EEFQAARSSS WSQIMPASSP RSCITSFSSN MLDFSNNKSD GRHQKPDHSS 180 ECNSTATGGV FKKARVQPPS TQPTFKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG 240 YIRFLQSQIE ALSSPYLGTG SGNKGQQQSV QGERNCIFPE DPGQLLNDNC IKRRGAPEQD 300 SEDEPKKDLR SRGLCLVPIS FTVHVGSDNG ADYWAPSLGG GFR

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MNRGVLQSSP VQQMMAGSPN WWSINNMRPP PQQPSPLLPS PSSFFPQYTP PPSSLPVTYW  60
NDNQDLPESW SQLLLGGLVG EEDRAGLNHF HHAKKMENWE DQLLYTSQNV PVVDVKQEVS  120
ENGYVYGHGN EEFQAARSSS WSQIMPASSP RSCITSFSSN MLDFSNNKSD GRHQKPDHSS  180
ECNSTATGGV FKKARVQPPS TQPTFKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG  240
YIRFLQSQIE ALSSPYLGTG SGNKGQQQSV QGERNCIFPE DPGQLLNDNC IKRRGAPEQD  300
SEDEPKKDLR SRGLCLVPIS FTVHVGSDNG ADYWAPSLGG GFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249647.1	0.0	PREDICTED: transcription factor bHLH68-like
Swissprot	Q8S3D1	1e-103	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A1U7ZE73	0.0	A0A1U7ZE73_NELNU; transcription factor bHLH68-like
STRING	XP_010249647.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-99	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]