PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003467-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 740aa    MW: 82086.9 Da    PI: 6.0504
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003467-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.1e-2193148156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  NNU_003467-RA  93 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 148
                    7999************************************************9877 PP
2START227.73.4e-712654855206
                    HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
          START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                    +a++e++k+a+a+ep+Wv+s+    e++n+de++++f+ +++      +s+ea+r+sgvv+ +l +lv+ ++d++ qW+e+++    ka+t++vi+
  NNU_003467-RA 265 QALEEVNKMATAGEPLWVRSVetgrEILNYDEYVRQFSVENSsngrikRSIEASRESGVVFVDLSRLVQAFMDVN-QWKEMFPcmisKAATVDVIC 359
                    67899********************************8888899*******************************.******************** PP

                    TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
          START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                    +g      ga+qlm+aelq+l+p+vp R+++f+Ry++ql+ ++w+ivdvS+d  +++  ++s+v+++++pSg+++e+ksngh+kvtwveh +++++
  NNU_003467-RA 360 DGegvnrnGAVQLMFAELQMLTPMVPtREVYFIRYCKQLSPERWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKS 454
                    ********************************************************98.9************************************ PP

                    XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                    ++h ++rs+v+sg+a+ga++w+atlq qce+
  NNU_003467-RA 455 TVHTMFRSIVNSGTAFGARHWMATLQLQCER 485
                    *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-2378144IPR009057Homeodomain-like
SuperFamilySSF466899.19E-2181151IPR009057Homeodomain-like
PROSITE profilePS5007118.2290150IPR001356Homeobox domain
SMARTSM003898.3E-1992154IPR001356Homeobox domain
PfamPF000469.9E-1993148IPR001356Homeobox domain
CDDcd000862.72E-1797148No hitNo description
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PROSITE profilePS5084839.06252488IPR002913START domain
SuperFamilySSF559616.48E-34254485No hitNo description
CDDcd088755.77E-112256484No hitNo description
SMARTSM002344.4E-73261485IPR002913START domain
PfamPF018526.5E-57265485IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-5315480IPR023393START-like domain
SuperFamilySSF559612.47E-13515730No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MGVDMSNPSS RTKDFFASPA LSLTLAGVFR GAATPAASVE VEQGDEESGG GGREDAVEIS  60
SENTGPGRSD EDGYAEGDEE DDGEEGKNKK KKRKKYHRHT AEQIREMEAL FKESPHPDEK  120
QRQQLSKQLG LAPRQVKFWF QNRRTQIKAI QERHENALLK SEIEKLREEN RTMRETIKKA  180
CCPNCGFATS SKDVTTEEQQ LRIENAKLKA ELEKLRATIA KYPPGTASPS SSCSAGNDQE  240
NRSSLDYYTG IFGLEKSRIL EIVYQALEEV NKMATAGEPL WVRSVETGRE ILNYDEYVRQ  300
FSVENSSNGR IKRSIEASRE SGVVFVDLSR LVQAFMDVNQ WKEMFPCMIS KAATVDVICD  360
GEGVNRNGAV QLMFAELQML TPMVPTREVY FIRYCKQLSP ERWAIVDVSI DKVEDNIDAS  420
LVKCRKRPSG CIVEDKSNGH CKVTWVEHLE CQKSTVHTMF RSIVNSGTAF GARHWMATLQ  480
LQCERIVFFM ATNVPTKDST GVATLAGRKS ILKLAQRMTW SFCRAVGASS FHTWTKISTK  540
GGEDIRVASR KNLNDPAEPL GVILCAVSSV CLPVSPHILF DFLRDDSRRH EWDIMLTGGP  600
VQSIANLAKG QDRGNAVTIQ SSVWILQDSC TNAYESMVVY APVDITGTQS VITGCDSSNV  660
AILPSGFSIL PDGLETRPLV LTSRPEEKTT EGGSLLTIAF QILANTSPTA KLTMESVETV  720
NNFISCTLQN IKTNLQCEDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893KKKKRK
28894KKKKRKK
39094KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249693.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A1U7ZNN20.0A0A1U7ZNN2_NELNU; homeobox-leucine zipper protein GLABRA 2-like
STRINGXP_010249693.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]