PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_003668-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HB-other

Protein Properties

Length: 347aa MW: 39467.1 Da PI: 4.4403

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_003668-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1e-09	278	325	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k q+e+Le+++ +++ p+ +++ + + ++L+ r+V WF +Ra NNU_003668-RA 278 RLKKVQIETLERVYSRTKRPTNAMISSIVHVTNLPRRRVLQWFEDKRA 325 57899******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.701	270	330	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-10	272	332	IPR009057	Homeodomain-like
CDD	cd00086	3.55E-7	276	325	No hit	No description
SMART	SM00389	2.1E-4	276	334	IPR001356	Homeobox domain
Pfam	PF00046	3.0E-7	278	325	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.4E-9	278	326	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002229	Biological Process	defense response to oomycetes
GO:0009414	Biological Process	response to water deprivation
GO:0009682	Biological Process	induced systemic resistance
GO:0009787	Biological Process	regulation of abscisic acid-activated signaling pathway
GO:0010118	Biological Process	stomatal movement
GO:0050832	Biological Process	defense response to fungus
GO:2000022	Biological Process	regulation of jasmonic acid mediated signaling pathway
GO:2000071	Biological Process	regulation of defense response by callose deposition
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MAAASSSSSV VFWGSAASRH SDRLFVGRLA PPSPYVVVPR APFNCSTLVF SRRRRNSSSA 60 VTSSTTEKMK KKNKKLILPE NDDGEEEDID EDAFEALFRQ LEEDLKNDDL SVDDSDDEIS 120 EEDLAKLEQE LEEALGDDEL SGMFDSTTDA TKNDMESEEE EEEEEEEEEE EEEELKLKNW 180 QLRRLASALK DGRRKTRIKS LAAELCLDRA VVLELLRDPP PNLLLMCASL PDKVVPTSLP 240 ETKPMDPSEG TEIDAAEPEP KVKMPVHVMQ TRWSMQKRLK KVQIETLERV YSRTKRPTNA 300 MISSIVHVTN LPRRRVLQWF EDKRAEDGVP DHRLPYQRSA ADTVFTS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MAAASSSSSV VFWGSAASRH SDRLFVGRLA PPSPYVVVPR APFNCSTLVF SRRRRNSSSA  60
VTSSTTEKMK KKNKKLILPE NDDGEEEDID EDAFEALFRQ LEEDLKNDDL SVDDSDDEIS  120
EEDLAKLEQE LEEALGDDEL SGMFDSTTDA TKNDMESEEE EEEEEEEEEE EEEELKLKNW  180
QLRRLASALK DGRRKTRIKS LAAELCLDRA VVLELLRDPP PNLLLMCASL PDKVVPTSLP  240
ETKPMDPSEG TEIDAAEPEP KVKMPVHVMQ TRWSMQKRLK KVQIETLERV YSRTKRPTNA  300
MISSIVHVTN LPRRRVLQWF EDKRAEDGVP DHRLPYQRSA ADTVFTS

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250031.1	0.0	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
Refseq	XP_010250032.1	0.0	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
Swissprot	Q8H0V5	9e-79	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	A0A1U7ZBI9	0.0	A0A1U7ZBI9_NELNU; protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
STRING	XP_010250031.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	1e-71	overexpressor of cationic peroxidase 3

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]