PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003736-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family YABBY
Protein Properties Length: 217aa    MW: 24167.8 Da    PI: 8.5905
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003736-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY97.62.8e-3091235134
          YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnv..ekeesastsvss 98 
                     +seqvCy+ CnfCn ilavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++           ++  +++ +++     +++ ++ + ++ 
  NNU_003736-RA   9 LQSEQVCYIPCNFCNIILAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSWQDL----------QTPSFTSPDYRIDLgsSSKCNKVAMRPP 94 
                    579********************************************99999998884..........2222333333222200222222222222 PP

          YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfik 134
                       + n+++ +     v+rP ekrqrvPsayn+fi 
  NNU_003736-RA  95 --PPANSEQRI-----VNRPAEKRQRVPSAYNQFIN 123
                    ..234444444.....59****************96 PP
2YABBY77.44.4e-24149189130170
          YABBY 130 nrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                    n   +eeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  NNU_003736-RA 149 NMVHREEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 189
                    56679**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.5E-3810123IPR006780YABBY protein
PfamPF046908.0E-22150189IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSMSTCINLQ SEQVCYIPCN FCNIILAVSV PCSSLFDIVT VRCGHCTNLW SVNMAAALQS  60
LSWQDLQTPS FTSPDYRIDL GSSSKCNKVA MRPPPPANSE QRIVNRPAEK RQRVPSAYNQ  120
FINAIASSSI FPTPLVVIAP AVTQLFLSNM VHREEIQRIK ANNPEISHRE AFSTAAKNWA  180
HFPHIHFGLM LENKNQAKLD EGSDRHLMTK AAAILNK
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250140.11e-132PREDICTED: axial regulator YABBY 5-like isoform X3
SwissprotQ8GW464e-77YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A1U7ZNG61e-131A0A1U7ZNG6_NELNU; axial regulator YABBY 5-like isoform X3
STRINGXP_010250138.11e-129(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-79YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]