PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_003782-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 335aa MW: 39057 Da PI: 5.6892

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_003782-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.6	5.6e-25	62	144	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 kfYn YAke+GF vr+++s +kr +e + ++Cs+eg+++e+ k r+r+etrtgC a++++k++++ +w+v++++l+HnH+ NNU_003782-RA 62 KFYNCYAKELGFGVRVKNSWFKKRGKEKYIVVLCCSREGFKRERGAK-----RSRPETRTGCPAMIRIKLMDSTVWRVIEVRLDHNHS 144 6****************************************9988.....9********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-22	62	144	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.087	219	255	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-5	227	253	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-5	230	257	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MEEVSLNSEP VFEMEDEGGE SEMEGDCTIM ESDGQNGEIH GSKEPVPPAV GMEFESYDEA 60 YKFYNCYAKE LGFGVRVKNS WFKKRGKEKY IVVLCCSREG FKRERGAKRS RPETRTGCPA 120 MIRIKLMDST VWRVIEVRLD HNHSNSPASA RFYKSHRAKR NSQLYCDSGI ALDGREYENL 180 VVDGRYLKNY ADQCNRPIIT YIVKERSEGE QNSWEIRDFE VLYNAAEMDV HCICGWFNFK 240 GYLCRHALSV LNYNGVEEIP PQFILSRWRK DFKCIYVPYH DSDNIDVNNP VQRYDQLYKH 300 ALQIVEEGVI SQERYKVALQ VLEESLNKVR LIEDH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250207.1	1e-138	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_010250208.1	1e-138	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_010250209.1	1e-138	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_010250211.1	1e-138	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_010250212.1	1e-138	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_019052439.1	1e-138	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	2e-43	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1U7ZNM9	1e-136	A0A1U7ZNM9_NELNU; protein FAR1-RELATED SEQUENCE 6
STRING	XP_010250207.1	1e-137	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	8e-46	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]