PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003940-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LFY
Protein Properties Length: 395aa    MW: 44264.7 Da    PI: 6.6057
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003940-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY631.71.2e-19213761385
        FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslsei 96 
                    mdp+afsaslfkwdpr  aa+p++rlle  a  +ap  a  ++  r+l +le++f+ayG+ry+t+akiaelGftvstL+dmkdeeldd+m+sls+i
  NNU_003940-RA   1 MDPDAFSASLFKWDPRGGAAPPANRLLEAVA--QAP--AYPTIRPRELGGLEDFFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELDDMMTSLSQI 92 
                    9****************99999999976554..334..3567788899************************************************ PP

        FLO_LFY  97 frldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqe.........glseepvqeekeaagsggegl..geaelvaaeekks 181
                    fr++llvGeryGikaavraerrrlee+e  ++rr+l++ d+++aldalsqe         glseepvq+ekea+gsgg+    g++e+++ae    
  NNU_003940-RA  93 FRWELLVGERYGIKAAVRAERRRLEEDE--TRRRHLIALDTTNALDALSQEgwyklhltpGLSEEPVQQEKEAVGSGGGAGggGTWEVAGAE---- 182
                    **************************77..99999****************99999999899*************98776400344444443.... PP

        FLO_LFY 182 eeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekc 277
                       +kk+   +++rk+ ++    + +++e++e  ++e++g +g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekc
  NNU_003940-RA 183 ---RKKN---NRRRKTPSR----SGDEDEDDEAAEDEEGGVGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKC 268
                    ...2333...223333333....233334445556667788899**************************************************** PP

        FLO_LFY 278 PtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtk 373
                    PtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdee+sn+lrrafkergenvGawrqacykplv++aarqgwdida+fn+hprLsiWYvPtk
  NNU_003940-RA 269 PTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEESNTLRRAFKERGENVGAWRQACYKPLVSMAARQGWDIDAIFNSHPRLSIWYVPTK 364
                    ************************************************************************************************ PP

        FLO_LFY 374 LrqLChlerska 385
                    LrqLCh+ers+a
  NNU_003940-RA 365 LRQLCHAERSNA 376
                    *********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.9E-1991376IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDPDAFSASL FKWDPRGGAA PPANRLLEAV AQAPAYPTIR PRELGGLEDF FQAYGIRYYT  60
AAKIAELGFT VSTLLDMKDE ELDDMMTSLS QIFRWELLVG ERYGIKAAVR AERRRLEEDE  120
TRRRHLIALD TTNALDALSQ EGWYKLHLTP GLSEEPVQQE KEAVGSGGGA GGGGTWEVAG  180
AERKKNNRRR KTPSRSGDED EDDEAAEDEE GGVGGGERQR EHPFIVTEPG EVARGKKNGL  240
DYLFHLYEQC REFLIQVQNI AKERGEKCPT KVTNQVFRYA KKAGASYINK PKMRHYVHCY  300
ALHCLDEEES NTLRRAFKER GENVGAWRQA CYKPLVSMAA RQGWDIDAIF NSHPRLSIWY  360
VPTKLRQLCH AERSNAVSAS ACSSSCATIA PPSTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1092153752162PROTEIN LEAFY
2vy2_A1e-1092153752162PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2028190.0KC202819.1 Nelumbo nucifera clone 1494 leafy (LFY) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250510.10.0PREDICTED: floricaula/leafy homolog 1
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A1U7ZPC00.0A0A1U7ZPC0_NELNU; floricaula/leafy homolog 1
STRINGXP_010250510.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-106floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]