PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004088-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 335aa    MW: 38035.1 Da    PI: 8.0881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004088-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047193215223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +C+ C+++++++ +L  H +  H
  NNU_004088-RA 193 SCSVCSRVYPTSRLLSIHVSEaH 215
                    6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.82165190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167190IPR007087Zinc finger, C2H2
SMARTSM003555.4192215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194215IPR007087Zinc finger, C2H2
SMARTSM003550.15230255IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSSYFLKANV EVEQGDEESK GGGYEDAIEI STENTGYLDG SQAFNGHFSK FNFTIKLVDK  60
AGANYLNINL QVEKEKLLAH SFSKPIDFKR HQSAKAKKIM VITANEDKLG FPYWIPVCRR  120
FSPDAPFFAS SNIERELLAK QVALDLTEDE KNQILDMEYE GGWVVFCPIV GCGAQLSSLE  180
DFEDHYHARH TASCSVCSRV YPTSRLLSIH VSEAHDSFFQ AKVARGFPMY ECLVEGCGMK  240
LKSYKSRQQH LVDKHKFPTS FEFFKKAHPS KKQRQKYQRK QADHKREEAM EEEEMITGLV  300
SAVSKLSMDS SPSSISFGHR RSHGLKFTPR SLQKG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250708.11e-178PREDICTED: zinc finger protein 511 isoform X2
TrEMBLA0A1U7ZPW31e-177A0A1U7ZPW3_NELNU; zinc finger protein 511 isoform X2
STRINGXP_010250707.11e-157(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-94zinc ion binding;nucleic acid binding;zinc ion binding