PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004202-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 1390aa    MW: 155491 Da    PI: 8.3343
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004202-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0006812741299123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                     y+C    C++ Fs+k +L+ H r+ +
  NNU_004202-RA 1274 YQCDieGCSMGFSSKQELVLHKRNiC 1299
                     99********************9877 PP
2zf-C2H211.20.001112991321323
                     ET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                     C+   Cgk F ++ +L++H r+H
  NNU_004202-RA 1299 CSvkGCGKKFFSHKYLVQHRRVH 1321
                     77779****************99 PP
3zf-C2H211.90.0006913571383123
                     EEET..TTTEEESSHHHHHHHHHH..T CS
        zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                     y+C    Cg++F+  s++ rH r+  H
  NNU_004202-RA 1357 YVCRepGCGQTFRFVSDFSRHKRKtgH 1383
                     899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.3E-183475IPR003349JmjN domain
PROSITE profilePS5118313.8413576IPR003349JmjN domain
PfamPF023751.6E-133669IPR003349JmjN domain
PROSITE profilePS5118434.37202371IPR003347JmjC domain
SMARTSM005588.3E-52202371IPR003347JmjC domain
SuperFamilySSF511971.87E-26216375No hitNo description
PfamPF023738.3E-37235354IPR003347JmjC domain
SMARTSM003557.612741296IPR015880Zinc finger, C2H2-like
SMARTSM003550.01512971321IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.5712971326IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-512981325IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012991321IPR007087Zinc finger, C2H2
SuperFamilySSF576671.68E-913131355No hitNo description
Gene3DG3DSA:3.30.160.603.2E-813261351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001413271351IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.74113271356IPR007087Zinc finger, C2H2
PROSITE patternPS00028013291351IPR007087Zinc finger, C2H2
SuperFamilySSF576672.83E-813451379No hitNo description
Gene3DG3DSA:3.30.160.602.4E-913521380IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.84513571388IPR007087Zinc finger, C2H2
SMARTSM003550.2513571383IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013591383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1390 aa     Download sequence    Send to blast
MRGFKCSSDL QLMAVVAAAE SPPEIFPWLK NLPLAPEYHP SVAEFQDPIA YILKIEKEAS  60
KFGICKIVPP LPPLPKKTVI ANINRSLAAR NNNSNSKSLP AFTTRQQQVG FCPRKSRPVQ  120
KPVWQSGETY TLQEFEAKAK QFEKTHLKKT GKKAISALEI ETLFWKASMD KPFSVEYAND  180
MPGSAFEPVN GKKWQEAGEA GSVGETAWNM RGVSRAKGSL LRFMKEEIPG VTSPMVYIGM  240
LFSWFAWHVE DHDLHSLNYL HMGAGKTWYG VPRDAAFAFE EVVRVHGYGE EVNPLVTFAI  300
LGEKTTVMSP EVLISTGIPC CRLVQNAGEF VVTFPRAYHS GFSHGFNCGE AANIATPEWL  360
RVAKEAAIRR ASINYPPMVS HFQLLYSLAL ALCSRIPMSI STEPRSSRLK DKRRGEGETM  420
VKELFVQNVV QNNDLIHVLL KKGSSCILLP HNSLDLSICS NLRVGSQRKV NPRLSLGLHS  480
PKEEMEASKI LLSDDMVLDR NTHLRNLSGF SSVKRKTSSV YERKSVPTLC GADYFCTSTT  540
EMHNLQTERV YNAGDGLLDQ GLFSCVVCGI LSFACTAIIQ PSEAAARYLV SADCSFFNDW  600
IVGSGVATDR YTVLDGDAGT AKLNSCSGME KCVRDGLYDV PVQSGDYQFQ VAGQSVEVTS  660
DTKTKTGISS LDLLAFAYGN SSDSEEDQDK PELSVFSDED DLKDSSSQCR STHSVLSSEH  720
TSLCNSSKLS LVHASTHKDG APSTLSCPSS TVSYASEVSV QVYASDSTPG HPSTNLKNQH  780
KKNFDTSLKS DTRSLVTLES NDLDDTYRDP LVVSRRVASK FTEVHHCDGK MDNIESERMK  840
SNDAETSVKS KAISLMQRTD NDSSRLHIFC LEHAVEVEKQ LNPIGGVHVL LLCHPEYLKI  900
EAEAKSLAEE LGIDYLWKDV PVREATEEDQ QRIQSALDDD EVIPSNGDWA VKLGINLYYS  960
ATISRSPLYS KQMPYNSVIY KAFGRSSPDI SPTRSKDSGK RPGKQKKIVV AGRWCGKVWM  1020
SNQVHPYLAQ ADESEEQELT RSFPIQTMPN RKPDRKVDIS QQEQPVLPEK IPLRGTMTTV  1080
AKNPGRKRKR SEKGMIKKQN CLQRDNPITS IDDSPELDTP SPCGRLIRSE QMKHETPPHH  1140
NDCEDIREED SCEKDDIEGG LSMRLRKRPQ KKPYEEVKVK PMHEKQTKKK SKKTSSSNEV  1200
DTKDEEADYL CNIEGCSCKK DGIEGGLSMR LRKRPQKKPC EVKVKPMNEK QMKKKGKETS  1260
SSNEVDTKDE EAEYQCDIEG CSMGFSSKQE LVLHKRNICS VKGCGKKFFS HKYLVQHRRV  1320
HMDDRPLKCP WKGCKMTFKW AWARTEHIRV HTGARPYVCR EPGCGQTFRF VSDFSRHKRK  1380
TGHSVKKGKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-79284608413Transcription factor jumonji (Jmj) family protein
6ip4_A2e-79284608413Arabidopsis JMJ13
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4668325e-48AM466832.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X011128.17, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250905.10.0PREDICTED: lysine-specific demethylase JMJ705-like
TrEMBLA0A1U7ZHC10.0A0A1U7ZHC1_NELNU; lysine-specific demethylase JMJ705-like
STRINGXP_010250905.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6