PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004272-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 393aa    MW: 43256 Da    PI: 5.6183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004272-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-174695255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  NNU_004272-RA 46 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 95
                   59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.9E-3546109IPR001471AP2/ERF domain
CDDcd000182.54E-3046104No hitNo description
Gene3DG3DSA:3.30.730.101.1E-2946103IPR001471AP2/ERF domain
PROSITE profilePS5103222.45846103IPR001471AP2/ERF domain
PfamPF008474.4E-114695IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2146104IPR016177DNA-binding domain
PRINTSPR003672.3E-94758IPR001471AP2/ERF domain
PRINTSPR003672.3E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEEAMRRLNG VAHSPDSDTN DLSSDLHKKC NKRNLKDGGS GGGTMRYRGV RRRPWGRYAA  60
EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGLKART NFQYPTSPSH PSTDHLLPPF  120
DIARPSAPSL RDLSSHRNVA ASDWSTWSNT RGIDFPGSTT HKSSSSSLNM HILRDFLGSS  180
PSSSFSNPPQ FLDPAPFYGS STSVPCSFIS SVSNPSFSSD VSNLSGEVSF KGSSLNLPAV  240
EDRQACMPAI DITDPTDDMK FFPSESSGSG LLQEIISGFF PKTSCTKSVS SSKDSNCTRD  300
PLFVAPDSEM ALDPSLVETV KKEIETEHIG LYLDYQGNSQ QFEVRRDGQL SEPMPLYNEL  360
PKSFPVMTEG MLEDIIHHPE LLDIFASKLQ QNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1935102171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251056.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A1U7ZS360.0A0A1U7ZS36_NELNU; ethylene-responsive transcription factor ESR2-like
STRINGXP_010251056.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-13DORNROSCHEN-like