PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_004312-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 187aa MW: 20254.1 Da PI: 7.8081

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_004312-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.7	1.1e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l++el++ NNU_004312-RA 10 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVHRLQKELDA 105 7*********************************************************************************************99 PP DUF260 97 lke 99 +++ NNU_004312-RA 106 ANA 108 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.815	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-44	10	107	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MASSSSSNSP CAACKFLRRK CMPGCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNELLP 60 HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVHRLQ KELDAANADL IRYACNEMAT 120 ALPATPATGI VPSPMAPRQR SAEFGRRMGD GVGSFYQIPG FPLPYPAPWP DGPSGDTHDR 180 VGGEGTM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-72	3	127	4	131	LOB family transfactor Ramosa2.1
5ly0_B	6e-72	3	127	4	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010251115.1	1e-138	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_010251116.1	1e-138	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_010251118.1	1e-138	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_010251119.1	1e-138	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_010251120.1	1e-138	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q9FML4	8e-73	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1U7ZC35	1e-137	A0A1U7ZC35_NELNU; LOB domain-containing protein 25-like
STRING	XP_010251115.1	1e-138	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-71	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]