PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_004386-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 352aa MW: 40186.4 Da PI: 6.9334

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_004386-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.7	2e-13	157	200	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er+RR++i+s+++ Lr l+Pk +K++ ++iL A+eYI++Lq NNU_004386-RA 157 ITERNRRNKIKSKLFALRALVPKI-----TKMDRMSILGDAIEYIQELQ 200 68*******************7.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-15	149	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.74E-12	149	204	No hit	No description
PROSITE profile	PS50888	14.907	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-13	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-11	157	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.7E-16	157	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MGQSNLFWEQ EAMIERNCTH KSLDEQMLSP AHDGDGYLHG DYLCFMSKHQ FGSVRPENDS 60 FHEGSSTGSI PSEEPQSFGS RSALGSRQMV ALMEQSDRIT TQDSLTESSV YREIGYNNCF 120 LIEQDMEIVS GHLMGGKDKL KACRRLGGEQ YQSKNLITER NRRNKIKSKL FALRALVPKI 180 TKMDRMSILG DAIEYIQELQ NNVKNLQDEL MCSQEKDESK SNIQLNIPNR RGGATEKIRR 240 QVHGTSCSSS TRENHDFSTV NDMGRQPMEV QVEVHQIDPN EFFVRLCCEH RRGWFRRLME 300 TMNSLGLQVT DVNVTTFKGM VLCNLKSTEV NHGELQAQHV KELLLKKICN PT

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MGQSNLFWEQ EAMIERNCTH KSLDEQMLSP AHDGDGYLHG DYLCFMSKHQ FGSVRPENDS  60
FHEGSSTGSI PSEEPQSFGS RSALGSRQMV ALMEQSDRIT TQDSLTESSV YREIGYNNCF  120
LIEQDMEIVS GHLMGGKDKL KACRRLGGEQ YQSKNLITER NRRNKIKSKL FALRALVPKI  180
TKMDRMSILG DAIEYIQELQ NNVKNLQDEL MCSQEKDESK SNIQLNIPNR RGGATEKIRR  240
QVHGTSCSSS TRENHDFSTV NDMGRQPMEV QVEVHQIDPN EFFVRLCCEH RRGWFRRLME  300
TMNSLGLQVT DVNVTTFKGM VLCNLKSTEV NHGELQAQHV KELLLKKICN PT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010251244.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
TrEMBL	A0A1U7ZSL7	0.0	A0A1U7ZSL7_NELNU; transcription factor ABORTED MICROSPORES-like isoform X1
STRING	XP_010251243.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	3e-43	bHLH family protein