PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_004410-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 408aa MW: 46688.8 Da PI: 8.5664

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_004410-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.2e-06	13	61	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +Er+RR +++ ++L l+Pk + + + + L +A YI +L NNU_004410-RA 13 KTIERNRRIHMKRLCFKLDALIPKHQNVYRDATNQRDRLDRAASYIMQL 61 679*******************65667777999999******998 PP
2	HLH	21.3	4.7e-07	233	285	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksLq 55 +++Er+RR +++ ++L +l+ k k s +K + L +A+ YIk+L+ NNU_004410-RA 233 RKIIERNRRIHMKGLCFKLASLIAKHHnasKDASSEGDKLD-LDHAISYIKQLR 285 579********************6658844444455555.9*******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.55	7	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-8	11	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-7	12	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.26	13	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.81E-5	226	289	No hit	No description
SuperFamily	SSF47459	2.36E-7	228	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	8.74	228	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-7	232	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-6	234	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MNTCGGSTKP DRKTIERNRR IHMKRLCFKL DALIPKHQNV YRDATNQRDR LDRAASYIMQ 60 LRERIEELKE RRQLVMCIKG INRNMRDSMK IDDVGLPVLE LRDSGPNLEV VLISGLNKSF 120 TFYEIICVLE EEGAEVVNAS FACVGDRIFH TIHAQVKCSR VGIETSTVSE RLKEVVHSMN 180 PTSFASADTE SPGFSRLLPF LPQSETLRGQ NLEEQKQEEM KQRRRSESAK LDRKIIERNR 240 RIHMKGLCFK LASLIAKHHN ASKDASSEGD KLDLDHAISY IKQLRERVEE LKGRKQFTMS 300 IKGINTDFRD TMKIEFTLPI LELRDLGPNL EVLLVSGFDK NFLFYEVISL LEEEGAEVVN 360 ASFSCIGDKI FHTIHAQVTS SGVGMEISRV RERLKDLVLS MLSTSFIN

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MNTCGGSTKP DRKTIERNRR IHMKRLCFKL DALIPKHQNV YRDATNQRDR LDRAASYIMQ  60
LRERIEELKE RRQLVMCIKG INRNMRDSMK IDDVGLPVLE LRDSGPNLEV VLISGLNKSF  120
TFYEIICVLE EEGAEVVNAS FACVGDRIFH TIHAQVKCSR VGIETSTVSE RLKEVVHSMN  180
PTSFASADTE SPGFSRLLPF LPQSETLRGQ NLEEQKQEEM KQRRRSESAK LDRKIIERNR  240
RIHMKGLCFK LASLIAKHHN ASKDASSEGD KLDLDHAISY IKQLRERVEE LKGRKQFTMS  300
IKGINTDFRD TMKIEFTLPI LELRDLGPNL EVLLVSGFDK NFLFYEVISL LEEEGAEVVN  360
ASFSCIGDKI FHTIHAQVTS SGVGMEISRV RERLKDLVLS MLSTSFIN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010251286.1	1e-133	PREDICTED: uncharacterized protein LOC104593221 isoform X2
TrEMBL	A0A1U7ZSQ4	1e-132	A0A1U7ZSQ4_NELNU; uncharacterized protein LOC104593221 isoform X2
STRING	XP_010251287.1	1e-131	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	5e-23	bHLH family protein