PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004414-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 254aa    MW: 28381.6 Da    PI: 4.5932
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004414-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-184192556
                   SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + ++  ++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  NNU_004414-RA 41 VSTSSVYVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 92
                   5666777899*****************************************9 PP
2HD-ZIP_I/II120.68e-3945128891
    HD-ZIP_I/II   8 keqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +  v+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ e++ ke+e+L++e+
  NNU_004414-RA  45 SVYVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLLSDYESVVKENEKLKSEV 128
                    55689****************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.48E-182696IPR009057Homeodomain-like
PROSITE profilePS5007116.2123494IPR001356Homeobox domain
SMARTSM003891.6E-163698IPR001356Homeobox domain
CDDcd000861.99E-163795No hitNo description
PfamPF000469.3E-164292IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-2044101IPR009057Homeodomain-like
PRINTSPR000313.6E-66574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000313.6E-67490IPR000047Helix-turn-helix motif
PfamPF021835.1E-1794136IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDSGRLFFDA SCHGNMLLLG SADPHLRVLR AKAFPFRHNK VSTSSVYVHL LEKSFEAENK  60
LEPERKTQLA KKLGLQPRQV AVWFQNRRAR WKTKQLERDY DLLKSSYDSL LSDYESVVKE  120
NEKLKSEVIF LNDKLQAKEA AGEVVVVGQK ADPPLLAASN GEAVSVTVKM EDRLSTGSGG  180
SAVVDEDAGL QLVDSGDSYF PDDEYQDCMG PIDGMQSEED DGSDDNRSYF SDVFAVAEQQ  240
HHEAGEALGW WVWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18694RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251294.11e-167PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
SwissprotQ022835e-71HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1U7ZCJ71e-165A0A1U7ZCJ7_NELNU; homeobox-leucine zipper protein HAT5-like isoform X1
STRINGXP_010251293.11e-166(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-55homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]