PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004445-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 193aa    MW: 22145.2 Da    PI: 10.1127
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004445-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-2069124156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +rk+ ++t++q+ +Le++F++++++s++e++eLAk l+L+ rq+ vWFqNrRa+ k
  NNU_004445-RA  69 KRKKLRLTAHQTAILESCFKQQSTLSQKEKTELAKGLNLKPRQIEVWFQNRRARTK 124
                    799999************************************************98 PP
2HD-ZIP_I/II113.41.5e-3670158190
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                    +kk+rl+++q ++LE++F+++++L++++K+ela+ L+l+prq++vWFqnrRARtk+kq+E+d+e+ k+++++l+een+rL++e  eLr +
  NNU_004445-RA  70 RKKLRLTAHQTAILESCFKQQSTLSQKEKTELAKGLNLKPRQIEVWFQNRRARTKSKQTEMDFEYFKHCCETLTEENRRLHRELMELR-A 158
                    69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-2050128IPR009057Homeodomain-like
SuperFamilySSF466891.03E-1954128IPR009057Homeodomain-like
PROSITE profilePS5007117.71866126IPR001356Homeobox domain
SMARTSM003893.2E-1768130IPR001356Homeobox domain
PfamPF000466.0E-1869124IPR001356Homeobox domain
CDDcd000862.63E-1569127No hitNo description
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
SMARTSM003401.0E-17126169IPR003106Leucine zipper, homeobox-associated
PfamPF021837.9E-9126159IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGTEKASRRL NLGEETKPKI TIQSISDNRG LSRGEGRTRG LGIDMNKIPN ESSDDSPNNG  60
DEEGMTIAKR KKLRLTAHQT AILESCFKQQ STLSQKEKTE LAKGLNLKPR QIEVWFQNRR  120
ARTKSKQTEM DFEYFKHCCE TLTEENRRLH RELMELRALN RPPQFLRTVC EALVVDPRVG  180
PRLNESCASL FGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARTKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251929.11e-117PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotA2YW034e-39HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotQ6YPD04e-39HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A1U7ZU711e-116A0A1U7ZU71_NELNU; homeobox-leucine zipper protein HAT14-like
STRINGXP_010251929.11e-117(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.17e-40HD-ZIP family protein