PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004512-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 328aa    MW: 37039.6 Da    PI: 4.8892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004512-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-20126176155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAak +++a+ +l+g
  NNU_004512-RA 126 KKFRGVRQRP-WGKWAAEIRDPA----RgVRLWLGTYDTAEEAAKVYDNAAIQLRG 176
                    59********.**********82....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.68E-33126184No hitNo description
PfamPF008473.9E-13127176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-30127184IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21127184IPR016177DNA-binding domain
PROSITE profilePS5103223.947127184IPR001471AP2/ERF domain
SMARTSM003801.1E-37127190IPR001471AP2/ERF domain
PRINTSPR003672.8E-10128139IPR001471AP2/ERF domain
PRINTSPR003672.8E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEHNFFSPVK YTEHRQLTKK FLKPSSMRHR NNPSEVNATD RPKVVRISFT DADATDSSSD  60
EDEFFGRHRV KRYVNEISIE SCSTDNDIAN GGWRSKSVRN GRKKSAGGEN IQSNRRPLNL  120
SSSNGKKFRG VRQRPWGKWA AEIRDPARGV RLWLGTYDTA EEAAKVYDNA AIQLRGPDAM  180
TNFATPPKAK QEIQVPTSSG YDSGEESHNL SSPTSVLRFS SPSSEESESQ NRQEPIKEVH  240
DETCLPDGFS ELLPLETPFL DDFLTFQTPA ELYQYDTSLP DSHIKEDFGD MFLSSNDDFG  300
SFSSTTWHVD DYFEEIGDIF ASDPLVVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21123183162ATERF1
3gcc_A5e-21123183162ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251534.10.0PREDICTED: ethylene-responsive transcription factor CRF3
TrEMBLA0A1U7ZRV60.0A0A1U7ZRV6_NELNU; ethylene-responsive transcription factor CRF3
STRINGXP_010251534.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-48cytokinin response factor 4