PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_004563-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 408aa MW: 45369 Da PI: 5.5653

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_004563-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.7	5e-20	69	142	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY++YA+++GFs+r+ + ++sk +g+it+r+fvCs+e ++++ ++ C a+lk+++++ +kw+vtk+++eHnH+ NNU_004563-RA 69 FYDAYARRIGFSTRVGQCNRSKPDGTITSREFVCSRESLKRKNIES--------------CSAMLKIERKDPDKWVVTKFVKEHNHST 142 9***********************************99998877..............************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-16	69	142	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MDVEVIDVEE ENMARRAAAE DADSEPNESG EMKMNENSTE KEAPSQEEDG SGEPHVGMEF 60 ESEDSAKAFY DAYARRIGFS TRVGQCNRSK PDGTITSREF VCSRESLKRK NIESCSAMLK 120 IERKDPDKWV VTKFVKEHNH STVSPSKVHY LRPRRHFAGA GKEGYQGVQI LPSGVIYAEE 180 GAIAVETYNV AMNSLREGGK KVSVVKKNVA RVAPPSSQVI GSNQDEISRR TPIPPTEMTP 240 SLWPRQDDVT RHFNLNDTGA PTPPVADLNL PRMAPVSLHR DDGPSDNMVV LPCLKSMTWV 300 MENKNSLANR VAVINLKLQD YSKTPSGETE VKFQLSRVTL EPMLRSMAYI SEQLSTPANR 360 VAVINLKLQD TETTTGETEV KFQVSRDTLG AMLRSMAYIR EQLSNASD

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MDVEVIDVEE ENMARRAAAE DADSEPNESG EMKMNENSTE KEAPSQEEDG SGEPHVGMEF  60
ESEDSAKAFY DAYARRIGFS TRVGQCNRSK PDGTITSREF VCSRESLKRK NIESCSAMLK  120
IERKDPDKWV VTKFVKEHNH STVSPSKVHY LRPRRHFAGA GKEGYQGVQI LPSGVIYAEE  180
GAIAVETYNV AMNSLREGGK KVSVVKKNVA RVAPPSSQVI GSNQDEISRR TPIPPTEMTP  240
SLWPRQDDVT RHFNLNDTGA PTPPVADLNL PRMAPVSLHR DDGPSDNMVV LPCLKSMTWV  300
MENKNSLANR VAVINLKLQD YSKTPSGETE VKFQLSRVTL EPMLRSMAYI SEQLSTPANR  360
VAVINLKLQD TETTTGETEV KFQVSRDTLG AMLRSMAYIR EQLSNASD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010251622.1	1e-142	PREDICTED: protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	1e-103	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1U7ZFE8	1e-141	A0A1U7ZFE8_NELNU; protein FAR1-RELATED SEQUENCE 3
STRING	XP_010251622.1	1e-142	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	4e-98	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]