PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_004585-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bZIP

Protein Properties

Length: 223aa MW: 24742.8 Da PI: 10.1853

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_004585-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.7	3.9e-16	167	210	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ NNU_004585-RA 167 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLKKQ 210 79***************************************963 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.9E-16	162	210	No hit	No description
SMART	SM00338	7.5E-12	163	221	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.702	165	210	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-13	167	210	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-11	167	210	No hit	No description
CDD	cd14707	8.29E-21	167	212	No hit	No description
PROSITE pattern	PS00036	0	170	185	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MGSQGGGGAG QQSQSQPLAR QSSLYSLTLD EVQNQLGDLG KPLSSMNLDE LLKNVWTAEA 60 NQGMGIDVEG SASVSQLASA SALQRQASLT LTRALSKKTV DEVWRDIQQG QKKNNEEQKA 120 QERQPTLGYP DNQLAMPSPL MGTLSDTQTP GRKRVAPGDV IEKTVERRQK RMIKNRESAA 180 RSRARKQAYT NELENKVSRL EEENERLKKQ KVKSLCQWMI NFG

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC215406	3e-64	KC215406.1 Camellia sinensis bZIP transcription factor bZIP7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006585689.1	1e-86	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
Refseq	XP_028244783.1	1e-86	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X3
Swissprot	Q9C5Q2	1e-56	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A445JIM1	6e-86	A0A445JIM1_GLYSO; ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform D
STRING	EMJ07855	8e-77	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	5e-49	bZIP family protein

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]