PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004655-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 150aa    MW: 17570.9 Da    PI: 9.6581
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004655-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.47.3e-46141421126
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    lp+G+rF Ptdeel++ yL++k+++ +l++ + ++evdiy+++P++L  k   + ++e ewyfF++r++ky++g+r++r t++g Wkatg dk+++
  NNU_004655-RA  14 LPVGYRFAPTDEELITAYLAEKIRDLTLRI-HKMTEVDIYQFDPEELIaKyrYTGEREGEWYFFTPRSRKYPNGSRPRRDTTNGHWKATGADKPIK 108
                    799***************************.77**************733322333444************************************* PP

            NAM  94 skkgelvglkktLvfykg.rapkgektdWvmhey 126
                    +k+++++g+kk+Lvfy+g +++kg+kt+W+mhe 
  NNU_004655-RA 109 DKNKNDIGVKKSLVFYSGsSSHKGSKTNWIMHEL 142
                    ****************9967899*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-4510147IPR003441NAC domain
PROSITE profilePS5100545.59514150IPR003441NAC domain
PfamPF023656.4E-2415142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MERITWVNDE VRELPVGYRF APTDEELITA YLAEKIRDLT LRIHKMTEVD IYQFDPEELI  60
AKYRYTGERE GEWYFFTPRS RKYPNGSRPR RDTTNGHWKA TGADKPIKDK NKNDIGVKKS  120
LVFYSGSSSH KGSKTNWIMH ELGLLNNKGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-411414415140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019052656.13e-61PREDICTED: NAC domain-containing protein 13-like
SwissprotA2YMR07e-42NAC10_ORYSI; NAC transcription factor ONAC010
SwissprotQ8GY422e-42NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A1U8Q3Q17e-60A0A1U8Q3Q1_NELNU; NAC domain-containing protein 13-like
STRINGXP_010251973.11e-108(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-39NAC family protein