PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004689-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 249aa    MW: 28522.8 Da    PI: 5.8839
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004689-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.81.3e-162810450127
            NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                    ++ ++e+ewyf+++rd+ky++++ ++  +++gyWkatg dk++++ +g ++g+kk+L    g +pk++ +dW+   yr
  NNU_004689-RA  28 HTVEKEQEWYFYAPRDRKYPKENMPKHFATNGYWKATGPDKDIKDGNGMNIGVKKSLNRV-GLNPKSKISDWIQIKYR 104
                    3445788********************8888***************************99.999999*****988887 PP
2NAM509.5e-1610616251107
            NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107
                    v ++e+ewyf+++rd+ky++g+++n++t++gyWkatg +k++++ +g ++g+kk+L+
  NNU_004689-RA 106 VGEKEQEWYFYTPRDRKYTKGNEPNQSTTNGYWKATGANKDIKDGNGMNIGVKKSLM 162
                    556789************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.4971173IPR003441NAC domain
SuperFamilySSF1019411.44E-1523108IPR003441NAC domain
PfamPF023651.4E-425104IPR003441NAC domain
SuperFamilySSF1019414.84E-17108173IPR003441NAC domain
PfamPF023655.4E-5110161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVMKITLSNN IVLLTAYVAE TLPNISRHTV EKEQEWYFYA PRDRKYPKEN MPKHFATNGY  60
WKATGPDKDI KDGNGMNIGV KKSLNRVGLN PKSKISDWIQ IKYRHVGEKE QEWYFYTPRD  120
RKYTKGNEPN QSTTNGYWKA TGANKDIKDG NGMNIGVKKS LMDDYVLCRI YEKKRGDSNR  180
INAPIVEANE SDEVEIDVED EFEVQEEEKD QGQGATANRE KEGMNKASEG VDRVENGISQ  240
VNVGVEEVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-152117461166NO APICAL MERISTEM PROTEIN
1ut4_B1e-152117461166NO APICAL MERISTEM PROTEIN
1ut7_A1e-152117461166NO APICAL MERISTEM PROTEIN
1ut7_B1e-152117461166NO APICAL MERISTEM PROTEIN
4dul_A1e-152117461166NAC domain-containing protein 19
4dul_B1e-152117461166NAC domain-containing protein 19
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019052656.14e-62PREDICTED: NAC domain-containing protein 13-like
TrEMBLA0A1U8Q3Q19e-61A0A1U8Q3Q1_NELNU; NAC domain-containing protein 13-like
STRINGXP_010251982.15e-47(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-19NAC domain containing protein 25