PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004698-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 374aa    MW: 43238.1 Da    PI: 8.3601
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004698-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.7e-076687223
                   EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                   +C+ Cg sF+ + +Lk+H+++H
  NNU_004698-RA 66 TCEECGASFRKPAYLKQHMQSH 87
                   6*******************99 PP
2zf-C2H219.23.2e-0693117123
                    EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                    ++Cp  dC+ s++rk++L+rH+  H
  NNU_004698-RA  93 FTCPvdDCSSSYRRKDHLTRHLLQH 117
                    89*******************9887 PP
3zf-C2H217.79.8e-06122147123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                    ++Cp  +C+++Fs + n+krH +  H
  NNU_004698-RA 122 FTCPmeNCNRMFSLQGNMKRHVNEmH 147
                    89*******************99888 PP
4zf-C2H221.65.6e-07162184123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C+ Cgk+F+  s L++H+ +H
  NNU_004698-RA 162 HACEECGKVFRFASKLRKHMDSH 184
                    67******************999 PP
5zf-C2H216.62.2e-05251275223
                    EET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                    kC+   C  +Fs+ksnL++Hi+  H
  NNU_004698-RA 251 KCSfkGCLHTFSTKSNLNQHIKAvH 275
                    688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355382144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-86486IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.33E-1164117No hitNo description
PROSITE profilePS5015713.4646592IPR007087Zinc finger, C2H2
SMARTSM003550.00396587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-1287119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.88993122IPR007087Zinc finger, C2H2
SMARTSM003550.002893117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-6120143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.92E-8120184No hitNo description
PROSITE profilePS5015712.217122152IPR007087Zinc finger, C2H2
SMARTSM003550.0037122147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5162184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.635162189IPR007087Zinc finger, C2H2
SMARTSM003550.0051162184IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
SMARTSM003552.7192217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194217IPR007087Zinc finger, C2H2
SMARTSM003558.7220241IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.13E-7231292No hitNo description
Gene3DG3DSA:3.30.160.605.5E-6231272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.385250280IPR007087Zinc finger, C2H2
SMARTSM003550.0017250275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252275IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-5274304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.1281307IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767281307IPR007087Zinc finger, C2H2
PROSITE patternPS000280283307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEGGDKEGAF TGPIFRDIRR YYCEFCGICR SKKSLITSHI LTYHKDEMEE KRDNNDQEKE  60
KRKSNTCEEC GASFRKPAYL KQHMQSHSIE RPFTCPVDDC SSSYRRKDHL TRHLLQHQGK  120
LFTCPMENCN RMFSLQGNMK RHVNEMHDDE EPSFSEGDGQ KHACEECGKV FRFASKLRKH  180
MDSHVKLDTV EAFCSEPGCL KCFTNVECLK AHIQSCHQYI TCEVCGVEQL KKNIKRHMRT  240
HEAGVTSESI KCSFKGCLHT FSTKSNLNQH IKAVHLELRP FACRFPGCGK KFPYKHVRDN  300
HEKTGTHVYV QGDFVESDEL FRTRPRGGRK RKCPAVETLL RKRVLPPSQM DSALSQGSDY  360
LAWLLSSTTH DEEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-166324720190Aart
2i13_B1e-166324720190Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323331RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251838.10.0PREDICTED: transcription factor IIIA
RefseqXP_010251839.10.0PREDICTED: transcription factor IIIA
RefseqXP_010251840.10.0PREDICTED: transcription factor IIIA
RefseqXP_010251841.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-140TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1U7ZTZ80.0A0A1U7ZTZ8_NELNU; transcription factor IIIA
STRINGXP_010251838.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-142transcription factor IIIA