PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004758-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 267aa    MW: 29735.2 Da    PI: 6.7758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004758-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-20117166255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +++GVr+++ +grW+AeIrdp+    r kr +lg+++taeeAa  +++a+ +l+g
  NNU_004758-RA 117 RFRGVRRRP-WGRWAAEIRDPT----RrKRLWLGTYDTAEEAATVYDKAAVRLKG 166
                    79*******.**********84....34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381237.8E-6714264IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.76E-30116175No hitNo description
SuperFamilySSF541715.49E-22117174IPR016177DNA-binding domain
PROSITE profilePS5103224.843117174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-29117174IPR001471AP2/ERF domain
PfamPF008471.6E-12117166IPR001471AP2/ERF domain
SMARTSM003807.8E-35117180IPR001471AP2/ERF domain
PRINTSPR003677.4E-10118129IPR001471AP2/ERF domain
PRINTSPR003677.4E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MNPTCRSDLE SGVFVTQSLK FSEHVVRTTK LVQGRKAAGK STGSCDSIRQ KVVRIIFTDV  60
DATDSSDDEG GNETVRRVKR HVREIFFDNV HTNVRREVSV KKRRSPEPES DGTCSKRFRG  120
VRRRPWGRWA AEIRDPTRRK RLWLGTYDTA EEAATVYDKA AVRLKGPDAV TNFPAFPGTE  180
TVAKGDDDLT KAAAAVAAAR SPTSVLCYDG LTAAFDSFGF GDVDAFGFNI DDLPLTLTEA  240
NFPKKYFGEE EFGDFDVEDF PSELIRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18112174972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121140RRRPWGRWAAEIRDPTRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252020.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046823e-62PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1U7ZUD20.0A0A1U7ZUD2_NELNU; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_010252020.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-25cytokinin response factor 4